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小木虫论坛-学术科研互动平台 » 计算模拟区 » 分子模拟 » Gromacs/Amber/NAMD » 小白虚拟机上练习装gromacs，在编译lam的时候遇到问题，大家帮忙看看
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月灯三昧

金虫 (小有名气)

[求助] 小白虚拟机上练习装gromacs，在编译lam的时候遇到问题，大家帮忙看看 已有1人参与

编译lam的时候，./configure --prefix=/home/cyj/lammpi CC=icc F77=ifort FC=ifort CXX=icpc，出现错误如下
C compiler cannot create executables
See `config.log' for more details.

查看config.log出现下面的情况，不知道哪出问题了，请大家帮忙看看
Configuring LAM version 7.1.4
============================================================================

*** Initialization, setup
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
configure: builddir: /home/roo/software/lam-7.1.4
configure: srcdir: /home/roo/software/lam-7.1.4
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
installing to directory "/home/cyj/lammpi"

*** C compiler and preprocessor
checking if want debugging output support... no
checking for gcc... icc
checking for C compiler default output file name... configure: error: C compiler cannot create executables
See `config.log' for more details.
[roo@localhost lam-7.1.4]$ cat config.log
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by configure, which was
generated by GNU Autoconf 2.59.  Invocation command line was

  $ ./configure --prefix=/home/cyj/lammpi CC=icc F77=ifort FC=ifort CXX=icpc

## --------- ##
## Platform. ##
## --------- ##

hostname = localhost.localdomain
uname -m = x86_64
uname -r = 3.10.0-327.el7.x86_64
uname -s = Linux
uname -v = #1 SMP Thu Nov 19 22:10:57 UTC 2015

/usr/bin/uname -p = x86_64
/bin/uname -X     = unknown

/bin/arch              = x86_64
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
hostinfo               = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /usr/local/bin
PATH: /usr/local/sbin
PATH: /usr/bin
PATH: /usr/sbin
PATH: /bin
PATH: /sbin
PATH: /home/roo/.local/bin
PATH: /home/roo/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:1730: checking for a BSD-compatible install
configure:1785: result: /usr/bin/install -c
configure:1796: checking whether build environment is sane
configure:1839: result: yes
configure:1904: checking for gawk
configure:1920: found /usr/bin/gawk
configure:1930: result: gawk
configure:1940: checking whether make sets $(MAKE)
configure:1960: result: yes
configure:2124: builddir: /home/roo/software/lam-7.1.4
configure:2126: srcdir: /home/roo/software/lam-7.1.4
configure:2162: checking build system type
configure:2180: result: x86_64-unknown-linux-gnu
configure:2208: checking host system type
configure:2222: result: x86_64-unknown-linux-gnu
configure:2670: checking if want debugging output support
configure:2684: result: no
configure:2745: checking for gcc
configure:2771: result: icc
configure:3015: checking for C compiler version
configure:3018: icc --version </dev/null >&5
./configure: line 3019: icc: command not found
configure:3021: $? = 127
configure:3023: icc -v </dev/null >&5
./configure: line 3024: icc: command not found
configure:3026: $? = 127
configure:3028: icc -V </dev/null >&5
./configure: line 3029: icc: command not found
configure:3031: $? = 127
configure:3054: checking for C compiler default output file name
configure:3057: icc    conftest.c  >&5
./configure: line 3058: icc: command not found
configure:3060: $? = 127
configure: failed program was:
| /* confdefs.h.  */
|
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define LAM_MAJOR_VERSION 7
| #define LAM_MINOR_VERSION 1
| #define LAM_RELEASE_VERSION 4
| #define LAM_ALPHA_VERSION 0
| #define LAM_BETA_VERSION 0
| #define LAM_SVN_VERSION 0
| #define LAM_VERSION "7.1.4"
| #define LAM_DEPENDENCY_PREFIX "/home/cyj/lammpi"
| #define LAM_ARCH "x86_64-unknown-linux-gnu"
| #define LAM_WANT_DEBUG 0
| /* end confdefs.h.  */
|
| int
| main ()
| {
|
|   ;
|   return 0;
| }
configure:3099: error: C compiler cannot create executables
See `config.log' for more details.

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_build_alias=x86_64-unknown-linux-gnu
ac_cv_env_CC_set=set
ac_cv_env_CC_value=icc
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXXLDFLAGS_set=
ac_cv_env_CXXLDFLAGS_value=
ac_cv_env_CXX_set=set
ac_cv_env_CXX_value=icpc
ac_cv_env_F77_set=set
ac_cv_env_F77_value=ifort
ac_cv_env_FC_set=set
ac_cv_env_FC_value=ifort
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_host_alias=x86_64-unknown-linux-gnu
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AWK=gawk
ac_cv_prog_ac_ct_CC=icc
ac_cv_prog_make_make_set=yes

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/roo/software/lam-7.1.4/config/missing --run aclocal-1.9'
AMDEPBACKSLASH=''
AMDEP_FALSE=''
AMDEP_TRUE=''
AMTAR='${SHELL} /home/roo/software/lam-7.1.4/config/missing --run tar'
AR=''
AUTOCONF='${SHELL} /home/roo/software/lam-7.1.4/config/missing --run autoconf'
AUTOHEADER='${SHELL} /home/roo/software/lam-7.1.4/config/missing --run autoheader'
AUTOMAKE='${SHELL} /home/roo/software/lam-7.1.4/config/missing --run automake-1.9'
AWK='gawk'
CASE_SENSITIVE_FS_FALSE=''
CASE_SENSITIVE_FS_TRUE=''
CC='icc'
CCDEPMODE=''
CFLAGS=''
CFLAGS_WITHOUT_OPTFLAGS=''
CLEANFILES='*~'
CP=''
CPP=''
CPPFLAGS=''
CXX='icpc'
CXXCPP=''
CXXCPPFLAGS=''
CXXDEPMODE=''
CXXFLAGS=''
CXXLDFLAGS=''
CYGPATH_W='echo'
DEFS=''
DEPDIR=''
ECHO='echo'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP=''
EXEEXT=''
EXTRA_LDFLAGS=''
F77='ifort'
F77_BUILD_DIR=''
F77_LTPLIB=''
FC='ifort'
FFLAGS=''
IMPID_DIR=''
IMPI_DIR=''
IMPI_LIB=''
IMPI_OBJS=''
IMPI_SERVER=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s'
LAM_ALPHA_VERSION='0'
LAM_BETA_VERSION='0'
LAM_BINDIR='/home/cyj/lammpi/bin'
LAM_CONFIGURE_DATE='Thu Aug 25 13:21:25 CST 2016'
LAM_CONFIGURE_HOST='localhost.localdomain'
LAM_CONFIGURE_USER='roo'
LAM_CXX_TEMPLATE_REPOSITORY=''
LAM_EXEC_PREFIX='/home/cyj/lammpi'
LAM_INDEXOF_FORTRAN_INTEGER8=''
LAM_INDEXOF_FORTRAN_REAL16=''
LAM_MAJOR_VERSION='7'
LAM_MANDIR='/home/cyj/lammpi/man'
LAM_MINOR_VERSION='1'
LAM_PREFIX='/home/cyj/lammpi'
LAM_RELEASE_VERSION='4'
LAM_SSI_boot_ALL_SUBDIRS=''
LAM_SSI_boot_DYNAMIC_SUBDIRS=''
LAM_SSI_boot_STATIC_LTLIBS=''
LAM_SSI_boot_STATIC_SUBDIRS=''
LAM_SSI_coll_ALL_SUBDIRS=''
LAM_SSI_coll_DYNAMIC_SUBDIRS=''
LAM_SSI_coll_STATIC_LTLIBS=''
LAM_SSI_coll_STATIC_SUBDIRS=''
LAM_SSI_crlam_ALL_SUBDIRS=''
LAM_SSI_crlam_DYNAMIC_SUBDIRS=''
LAM_SSI_crlam_STATIC_LTLIBS=''
LAM_SSI_crlam_STATIC_SUBDIRS=''
LAM_SSI_crmpi_ALL_SUBDIRS=''
LAM_SSI_crmpi_DYNAMIC_SUBDIRS=''
LAM_SSI_crmpi_STATIC_LTLIBS=''
LAM_SSI_crmpi_STATIC_SUBDIRS=''
LAM_SSI_rpi_ALL_SUBDIRS=''
LAM_SSI_rpi_DYNAMIC_SUBDIRS=''
LAM_SSI_rpi_STATIC_LTLIBS=''
LAM_SSI_rpi_STATIC_SUBDIRS=''
LAM_SVN_VERSION='0'
LAM_TOP_BUILDDIR='/home/roo/software/lam-7.1.4'
LAM_TOP_SRCDIR='/home/roo/software/lam-7.1.4'
LAM_VERSION='7.1.4'
LAM_WANT_DARWIN7MALLOC_FALSE=''
LAM_WANT_DARWIN7MALLOC_TRUE=''
LAM_WANT_INSTALL_MPIEXEC_FALSE=''
LAM_WANT_INSTALL_MPIEXEC_TRUE=''
LAM_WANT_PTMALLOC2_FALSE=''
LAM_WANT_PTMALLOC2_TRUE=''
LAM_WANT_PTMALLOC_FALSE=''
LAM_WANT_PTMALLOC_TRUE=''
LDFLAGS=''
LIBLAM_EXTRA_LDFLAGS=''
LIBLAM_EXTRA_LIBS=''
LIBLTDL=''
LIBLTDL_SUBDIR=''
LIBMPI_EXTRA_LDFLAGS=''
LIBMPI_EXTRA_LIBS=''
LIBOBJS=''
LIBS=''
LIBTOOL=''
LN_S=''
LTDLINCL=''
LTLIBOBJS=''
MAKEINFO='${SHELL} /home/roo/software/lam-7.1.4/config/missing --run makeinfo'
MPIF_H_PMPI_W_FUNCS=''
OBJEXT=''
PACKAGE='lam'
PACKAGE_BUGREPORT=''
PACKAGE_NAME=''
PACKAGE_STRING=''
PACKAGE_TARNAME=''
PACKAGE_VERSION=''
PATH_SEPARATOR=':'
RANLIB=''
RM=''
ROMIO_ARCH_FLAGS=''
ROMIO_USER_FLAGS=''
SET_MAKE=''
SHELL='/bin/sh'
SHELL_CMD=''
STRIP=''
TOTALVIEW_DEBUG_FLAGS=''
TOTALVIEW_DLL_DIR=''
VERSION='7.1.4'
WANT_CPPFILE_FALSE=''
WANT_CPPFILE_TRUE=''
WANT_DEPRECATED_EXECUTABLE_NAMES_FALSE=''
WANT_DEPRECATED_EXECUTABLE_NAMES_TRUE=''
WANT_FORTRAN_FALSE=''
WANT_FORTRAN_TRUE=''
WANT_IMPI_BUILD_FALSE=''
WANT_IMPI_BUILD_TRUE=''
WANT_LIBLTDL_FALSE=''
WANT_LIBLTDL_TRUE=''
WANT_MPI2CPP_FALSE=''
WANT_MPI2CPP_TRUE=''
WANT_MPI_STUBS_FALSE=''
WANT_MPI_STUBS_TRUE=''
WANT_PREFIX_MEMCPY_FALSE=''
WANT_PREFIX_MEMCPY_TRUE=''
WANT_PROFILE_BUILD_FALSE=''
WANT_PROFILE_BUILD_TRUE=''
WANT_ROMIO_FALSE=''
WANT_ROMIO_TRUE=''
WANT_TRILLIUM_INSTALL_FALSE=''
WANT_TRILLIUM_INSTALL_TRUE=''
WRAPPER_EXTRA_CFLAGS=''
WRAPPER_EXTRA_CXXFLAGS=''
WRAPPER_EXTRA_FFLAGS=''
WRAPPER_EXTRA_LDFLAGS=''
WRAPPER_EXTRA_LIBS=''
ac_ct_AR=''
ac_ct_CC='icc'
ac_ct_CXX=''
ac_ct_F77=''
ac_ct_RANLIB=''
ac_ct_STRIP=''
ac_prefix_program=''
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE=''
am__fastdepCXX_TRUE=''
am__include=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${prefix}/share'
exec_prefix='NONE'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
includedir='${prefix}/include'
infodir='${prefix}/info'
install_sh='/home/roo/software/lam-7.1.4/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localstatedir='${prefix}/var'
mandir='${prefix}/man'
mkdir_p='mkdir -p --'
oldincludedir='/usr/include'
prefix='/home/cyj/lammpi'
program_transform_name='s,x,x,'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

#define LAM_ALPHA_VERSION 0
#define LAM_ARCH "x86_64-unknown-linux-gnu"
#define LAM_BETA_VERSION 0
#define LAM_DEPENDENCY_PREFIX "/home/cyj/lammpi"
#define LAM_MAJOR_VERSION 7
#define LAM_MINOR_VERSION 1
#define LAM_RELEASE_VERSION 4
#define LAM_SVN_VERSION 0
#define LAM_VERSION "7.1.4"
#define LAM_WANT_DEBUG 0
#define PACKAGE_BUGREPORT ""
#define PACKAGE_NAME ""
#define PACKAGE_STRING ""
#define PACKAGE_TARNAME ""
#define PACKAGE_VERSION ""

configure: exit 77
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1楼 2016-08-25 13:25:59
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

FMStation

至尊木虫 (知名作家)

【答案】应助回帖

★ ★ ★ ★ ★
感谢参与，应助指数 +1
月灯三昧: 金币+5, ★有帮助, 感谢提供好网站，但是问题还是没有解决，不管怎样，还是谢谢你 2016-08-27 09:58:27
https://askubuntu.com/questions/ ... -create-executables

configure: error: C compiler cannot create executables
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2楼2016-08-25 23:17:29
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FMStation

至尊木虫 (知名作家)

【答案】应助回帖

★ ★ ★ ★ ★
月灯三昧: 金币+5, ★有帮助 2016-08-27 19:05:29
http://www-users.york.ac.uk/~bd512/bout/user_manual.pdf

Configuring BOUT++, you may get the error:
configure: error: C compiler cannot create executables
In that case, you can try using:
./configure CFLAGS="-maix64"
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3楼2016-08-27 10:05:01
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wuhoudao

新虫 (初入文坛)
引用回帖:
3楼: Originally posted by FMStation at 2016-08-27 10:05:01
http://www-users.york.ac.uk/~bd512/bout/user_manual.pdf

Configuring BOUT++, you may get the error:
configure: error: C compiler cannot create executables
In that case, you can try using:
./conf ...

可以安装一个高版本的gcc编译器试试
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4楼2016-11-30 13:18:39
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