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in.file ÈçÏÂ
===========================================
boundary        p p s
units           real

atom_style        charge
#neighbor        2 bin
#neigh_modify        every 10 delay 0 check no

read_data       data.input

pair_style        reax/c lmp_control
pair_modify     mix arithmetic
pair_coeff        * * ffield    Ti  O  C  H


fix      1      all qeq/reax 1 0.0 10.0 1.0e-6 reax/c
fix      2      all nvt temp  10.0  10.0  100.0   

min_style       cg
minimize        0.0 1.0e-8 1000 100000  #stopping tolerance for energy,force
                                        #max iterations,max number of force/energy evaluations

#thermo          1000   # output thermodynamics every N timesteps
#thermo_style    multi


write_restart   restart.md


clear



boundary        p p s
units           real

atom_style        charge
neighbor        2 bin
neigh_modify        every 1 delay 0 check no

read_restart    restart.md

pair_style        reax/c lmp_control
pair_modify     mix arithmetic
pair_coeff        * * ffield    Ti  O  C  H


fix   1      all qeq/reax 1 0.0 10.0 1.0e-6 reax/c
fix   2      all nvt temp  10.0  100.0  100.0  

#group    Atom_fix  id 1:312
#fix   3      Atom_fix    setforce    0.0 0.0 0.0
group   Ti     type   1
fix   4     Ti    setforce   0.0 0.0 0.0

timestep   1
thermo   10000
thermo_style    multi

fix walls all wall/reflect zlo EDGE zhi EDGE


run   10000
unfix  2

fix   2      all nvt temp  100.0  100.0  100.0  

dump 1  all xyz   1000  construction.xyz
dump_modify 1 element    Ti  O  C  H
dump_modify 1 sort id
compute 3 all  msd
fix    msd   all  ave/time  1  5   1000  c_3   file  dump  mode vector



run                1000000

================================================

control.file ÈçÏÂ

==========================================
simulation_name                CHO_example ! output files will carry this name + their specific ext

tabulate_long_range        1000 ! denotes the granularity of long range tabulation, 0 means no tabulation
energy_update_freq         1

nbrhood_cutoff                1.5  ! near neighbors cutoff for bond calculations in A
hbond_cutoff                6.0  ! cutoff distance for hydrogen bond interactions
bond_graph_cutoff        0.3  ! bond strength cutoff for bond graphs
thb_cutoff                0.001 ! cutoff value for three body interactions

write_freq                1    ! write trajectory after so many steps
traj_title                CHO ! (no white spaces)
atom_info                1    ! 0: no atom info, 1: print basic atom info in the trajectory file
atom_forces                1    ! 0: basic atom format, 1: print force on each atom in the trajectory file
atom_velocities                0    ! 0: basic atom format, 1: print the velocity of each atom in the trajectory file
bond_info                1    ! 0: do not print bonds, 1: print bonds in the trajectory file
angle_info                1    ! 0: do not print angles, 1: print angles in the trajectory file

=================================================



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2Â¥: Originally posted by tang_wei at 2015-12-19 09:16:39
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chenkunkun

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4Â¥: Originally posted by chenkunkun at 2015-12-24 09:14:40
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5Â¥: Originally posted by ûÂäµÄ»ªÀö at 2015-12-26 20:49:09
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