24小时热门版块排行榜    

查看: 47  |  回复: 0
当前主题已经存档。

libiqing77

铁虫 (初入文坛)

[交流] 关于生物信息学的web services问题

我现在要用一个网络服务,它的wsdl如下:
http://www.ebi.ac.uk/webservices/whatizit/ws?wsdl
这个服务的网络地址是
http://www.ebi.ac.uk/webservices/whatizit/info.jsf

我简单介绍一下,这个服务是文本处理,将你提交的文本中的基因、药物、疾病或者是蛋白质的信息标注出来,这个参数是由你自己选择的。我只需用到其中的一个方法contact,参数有三个,pipelineName、text和convertToHtml,其中pipelineName就是选择标注基因,还是蛋白质,还是疾病,text就是你要输入的文本信息,convertToHtml控制输出格式为Html还是XML。

我现在只需针对其中的这段WSDL编程:
type="ns4:contact" name="contact">








type="ns5:contactResponse" name="contactResponse">





















transport="http://schemas.xmlsoap.org/soap/http">













我编写的程序如下:
#!/usr/bin/perl -w
use strict;
use SOAP::Lite;

my$str='Quercetin, a ubiquitous bioactive plant flavonoid, has been shownto inhibit the proliferation of cancer cells and induce theaccumulation of hypoxia-inducible factor-1alpha (HIF-1alpha) innormoxia. In this study, under hypoxic conditions (1% O(2)), weexamined the effect of quercetin on the intracellular level ofHIF-1alpha and extracellular level of vascular endothelial growthfactor (VEGF) in a variety of human cancer cell lines. Surprisingly, weobserved that quercetin suppressed the HIF-1alpha accumulation duringhypoxia in human prostate cancer LNCaP, colon cancer CX-1, and breastcancer SkBr3 cells. Quercetin treatment also significantly reducedhypoxia-induced secretion of VEGF. Suppression of HIF-1alphaaccumulation during treatment with quercetin in hypoxia was notprevented by treatment with 26S proteasome inhibitor MG132 or PI3Kinhibitor LY294002. Interestingly, hypoxia (1% O(2)) in the presence of100 microM quercetin inhibited protein synthesis by 94% duringincubation for 8 h. Significant quercetin concentration-dependentinhibition of protein synthesis and suppression of HIF-1alphaaccumulation were observed under hypoxic conditions. Treatment with 100microM cycloheximide, a protein synthesis inhibitor, replicated theeffect of quercetin by inhibiting HIF-1alpha accumulation duringhypoxia. These results suggest that suppression of HIF-1alphaaccumulation during treatment with quercetin under hypoxic conditionsis due to inhibition of protein synthesis. J. Cell. Biochem.  2008Wiley-Liss, Inc.';#这是一篇文献的摘要

my $whatizit=SOAP::Lite -> service('http://www.ebi.ac.uk/webservices/whatizit/ws?wsdl');

my %parameters=();
$parameters{'pipelineName'}='whatizitSwissprotGo2';
$parameters{'text'}=$str;
$parameters{'convertToHtml'}='false';
print $whatizit->contact(
SOAP:ata->name('parameters')->type(map=>\%parameters)
);
但是怎么也得不到结果,请各位高手指点迷津。 谢谢!
回复此楼

» 猜你喜欢

已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖
相关版块跳转 我要订阅楼主 libiqing77 的主题更新
普通表情 高级回复 (可上传附件)
信息提示
请填处理意见