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北京石油化工学院2026年研究生招生接收调剂公告
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[求助] Multicomponent Reactions for de Novo Synthesis of BODIPY Probes:

Fluorescent probes are chemical entities of enormous
importance in biomedical research and medical imaging.
In the context of fluorescence live cell imaging, they enable realtime
tracking of biomolecules, metabolites and cells under
physiological conditions without altering regular cellular
functions.1 The 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene
(BODIPY) scaffold has played a pivotal role in fluorescent
probe development, and it is one of the most exploited
fluorophores due to its excellent photophysical properties.2
Amine and carboxylic acid-derivatized BODIPY dyes are readily
available, and have been conjugated to numerous biomolecules
to develop fluorescent compounds to enable biological
interrogation. This approach has rendered a wide variety of
BODIPY-based cell imaging probes.3 Combinatorial strategies
have recently expanded the chemical diversity of the BODIPY
core. These strategies employ efficient and stepwise reactions
(e.g., Knoevenagel condensation, ‘click’ chemistry) to implement
structural diversification into a presynthesized BODIPY
scaffold.4 Subsequent high-throughput screenings of the
resulting libraries have significantly accelerated the discovery
of new fluorescent probes.5 We envisioned that the use of
multicomponent reactions (MCRs)6 for the synthesis of
BODIPY fluorescent probes would lead to novel complexstructures that are difficult to prepare by conventional synthetic
strategies. MCRs can increase the chemical diversity of
BODIPY dyes with the formation of unusual C−C bonds
and give BODIPY compounds with unexplored chemical
connectivity and potentially new features as imaging probes.
Our group and others have described MCRs to prepare
complex fluorescent molecules based on 2,6-cyanodianilines,7
isoquinolines,8 naphthalimides,9 benzoazepines10 and imidazoles.
11 Balakirev and co-workers recently reported the
combinatorial exploitation of three component Ugi MCRs in
droplet arrays to successfully discover new fluorophores with
drug-like properties.12 Whereas these examples proved the
suitability of MCRs to generate de novo fluorescent structures,
they employed scaffolds with inherent limitations as fluorophores
(e.g., short emission wavelengths, low extinction
coefficients, poor quantum yields, compromised cell permeability).
The adaptation of MCRs to the highly fluorescent and cell
permeable BODIPY scaffold provides a practical platform to
develop novel compounds with unexpected features as cell
imaging fluorescent probes. Since the most versatile MCRs are
based on isonitrile chemistry,13 we prepared an isonitrile-
BODIPY scaffold (3) compatible with several MCRs (Scheme
1). Compound 3 was prepared in a two-step reaction from the
BODIPY aniline 1, obtained by reduction of the corresponding
nitro compound.14 The BODIPY aniline 1 was formylated with
HCO2Et to render the formamide 2, which was subsequently
dehydrated under standard conditions with POCl3 to afford the
isonitrile 3. Notably, the isonitrile functional group did not
affect the fluorescent properties of the BODIPY core (9)
(Figure S1 and Table S1 in Supporting Information (SI)). To
the best of our knowledge, this is the first report of an isonitrilefunctionalized
BODIPY dye and its subsequent derivatization
using MCRs.
We employedas the starting material for a number of
isonitrile-based MCRs, namely Passerini,15 Bienaymé−Blackburn−
Groebcke,16 and three variants of the Ugi-MCR17
(Scheme 1). We performed a Bienaymé−Blackburn−Groebcke
MCR with 3, α-aminopyridine, and 4-chlorobenzaldehyde toobtain the azaindole 4. A conventional Passerini reaction of 3
with propanal and 2,6-dimethyl-4-nitrobenzoic acid rendered
the adduct 5. A four-component Ugi MCR with isobutylaldehyde,
benzylamine, and benzoic acid afforded compound 6,
whereas the β-amino acid variation led to the β-lactam 8. The
adduct 7 was obtained with a variant of the Ugi MCR using
formaldehyde and diethylamine. Notably, all adducts (4−8)
were isolated in good yields (see details and characterization
data in SI) and retained the characteristic fluorescent properties
of the BODIPY core (Figure S1 and Table S1 in SI). The
synthesis of this collection of BODIPY adducts confirms that
the reactivity of the isonitrile group in different MCRs is not
hampered by the BODIPY structure. Altogether, the results
validate isonitrile-based MCRs as a synthetic platform for the
diversification of the BODIPY scaffold toward fluorescent
conjugates that might be difficult to prepare by conventional
strategies.We assessed the cell permeability of compounds 3−8 by
imaging their localization in live A549 cells together with
different intracellular trackers (Figures S2 and S3 in SI) and
observed that all adducts readily entered cells at concentrations
in the nanomolar range. While most adducts stained the
cytoplasm and some lysosomes, compound 7 exhibited a
distinctive, vesicle-like staining pattern (Figure 1). We
examined the subcellular localization of 7 in different cell
lines by colocalization with LysoTracker Red, a fluorescent dye
that labels acidic organelles (Figures S4 and S5 in SI).
The similar staining patterns of 7 and Lysotracker Red
indicated that 7 is an acidotropic fluorescent molecule with
bright fluorescence emission in subcellular acidic environments.
Compound 7 has a pKa of 5.76 ± 0.07 (Figure S6 in SI) andhigher sensitivity to pH than LysoTracker Red (Figure S7 in
SI).
We envisaged that these remarkable properties of 7 as a cell
permeable fluorescent probe for acidic microenvironments may
be applied to imaging phagosomal acidification in macrophages.
Macrophages are immune cells with key roles in inflammation
and tissue homeostasis. Macrophages ingest pathogens and
particles by phagocytosis. During the course of phagocytosis
the maturation and fusion of endosomes leads to a progressive
phagosomal acidification.18 Most currently used probes for
activated macrophages target the recognition of enzymes (e.g.,
cathepsins) or cell surface receptors (e.g., folate, integrins).19
Bogyo and co-workers recently described fluorescent probes tomonitor legumain activity in the acidic organelles of activated
macrophages.20We observed that compound 7 was nontoxic to macrophages
at 500 nM, even at long incubation times (Figure S10 in SI).
We also studied whether the treatment with compound 7
affected the secretion of TNF-α and IL-6, two major cytokines
released by macrophages. As shown in Figure 3, there were no
significant differences in the levels of TNF-α and IL-6 secreted
by nontreated and 7-treated macrophages before or after
stimulation with liposaccharide S (LPS). These results validate
7 as a fluorescent probe to image phagocytic macrophages
without impairing their normal function. On account of these
observations, compound 7 was named as PhagoGreen.

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