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zhjcao

木虫 (小有名气)

应助: 0 (幼儿园)
金币: 1997.6
散金: 82
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在线: 311.9小时
虫号: 48639
注册: 2004-06-26
专业: 环境微生物学

[交流] gene shuffling 电子书

贴子引起贴主题:
http://muchong.com/bbs/viewthread.php?tid=725811#pid=6295742

从发酵助手论坛看到近年来一些文章报道利用该技术进行微生物菌株改造:
一、有关genome shuffling的文献：

1、Genome Shuffling Improves Degradation of the Anthropogenic Pesticide Pentachlorophenol by Sphingobium chlorophenolicum ATCC 39723
MingHua Dai and Shelley D. Copley
Appl. Envir. Microbiol., Apr 2004; 70: 2391 - 2397.

2、Rapid improvement of lipase production in Penicillium expansum by genome shuffling]
J Lin, BH Shi, QQ Shi, YX He, and MZ Wang
Sheng Wu Gong Cheng Xue Bao, Jul 2007; 23(4): 672-6.

3、Genome-shuffling improved acid tolerance and L-lactic acid volumetric productivity in Lactobacillus rhamnosus.
Y Wang, Y Li, X Pei, L Yu, and Y Feng
J Biotechnol, May 2007; 129(3): 510-5.

4、Genome shuffling leads to rapid phenotypic improvement in bacteria.
YX Zhang, K Perry, VA Vinci, K Powell, WP Stemmer, and SB del Cardayre
Nature, Feb 2002; 415(6872): 644-6.

5、Genome shuffling of Streptomyces sp. U121 for improved production of hydroxycitric acid.
H Hida, T Yamada, and Y Yamada
Appl Microbiol Biotechnol, Jan 2007; 73(6): 1387-93.

6、Genome shuffling of Lactobacillus for improved acid tolerance.
R Patnaik, S Louie, V Gavrilovic, K Perry, WP Stemmer, CM Ryan, and S del Cardayre
Nat Biotechnol, Jul 2002; 20(7): 707-12.

7、Dealing with complexity: evolutionary engineering and genome shuffling.
R Petri and C Schmidt-Dannert
Curr Opin Biotechnol, Aug 2004; 15(4): 298-304.

8、The rarity of gene shuffling in conserved genes.
GC Conant and A Wagner
Genome Biol, Jan 2005; 6(6): R50.

9、Shuffling of Sulfolobus genomes by autonomous and non-autonomous mobile elements.
K Brugger, E Torarinsson, P Redder, L Chen, and RA Garrett
Biochem Soc Trans, Apr 2004; 32(Pt 2): 179-83.

10、Metabolic engineering by genome shuffling.
G Stephanopoulos
Nat Biotechnol, Jul 2002; 20(7): 666-8.

11、Differential shuffling of native genetic diversity across introduced regions in a brown alga: Aquaculture vs. maritime traffic effects
Marie Voisin, Carolyn R. Engel, and Frédérique Viard
PNAS, Apr 2005; 102: 5432 - 5437.

REVIEWS:
12、The replication-related organization of bacterial genomes
Eduardo P. C. Rocha
Microbiology, Jun 2004; 150: 1609 - 1627.

PHYSIOLOGY AND BIOTECHNOLOGY:
13、Efficient Production of L-Lactic Acid by Metabolically Engineered Saccharomyces cerevisiae with a Genome-Integrated L-Lactate Dehydrogenase Gene
Nobuhiro Ishida, Satoshi Saitoh, Kenro Tokuhiro, Eiji Nagamori, Takashi Matsuyama, Katsuhiko Kitamoto, and Haruo Takahashi
Appl. Envir. Microbiol., Apr 2005; 71: 1964 - 1970.

二、有关Exon shuffling方面的文献：
14、Trans mobilization of genomic DNA as a mechanism for retrotransposon-mediated exon shuffling
Yosuke Ejima and Lichun Yang
Hum. Mol. Genet., Jun 2003; 12: 1321 - 1328.

15、Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize.
M Morgante, S Brunner, G Pea, K Fengler, A Zuccolo, and A Rafalski
Nat Genet, Sep 2005; 37(9): 997-1002.

16、Recurrent Exon Shuffling Between Distant P-Element Families
Danielle Nouaud, Hadi Quesneville, and Dominique Anxolabéhère
Mol. Biol. Evol., Feb 2003; 20: 190 - 199.

17、Molecular mechanisms of exon shuffling: illegitimate recombination.
A van Rijk and H Bloemendal
Genetica, Jul 2003; 118(2-3): 245-9.

18、A novel testis ubiquitin-binding protein gene arose by exon shuffling in hominoids
Daria V. Babushok, Kazuhiko Ohshima, Eric M. Ostertag, Xinsheng Chen, Yanfeng Wang, Prabhat K. Mandal, Norihiro Okada, Charles S. Abrams, and Haig H. Kazazian, Jr.
Genome Res., Aug 2007; 17: 1129 - 1138.

19、Introns in gene evolution.
L Fedorova and A Fedorov
Genetica, Jul 2003; 118(2-3): 123-31.

三、有关Promoter shuffling方面的文献：
20、Promoter Shuffling at a Nuclear Gene for Mitochondrial RPL27. Involvement of Interchromosome and Subsequent Intrachromosome Recombinations
Minoru Ueda, Shin-ichi Arimura, Masayuki P. Yamamoto, Fumio Takaiwa, Nobuhiro Tsutsumi, and Koh-ichi Kadowaki
Plant Physiology, Jun 2006; 141: 702 - 710.

21、Multiple gene-promoter shuffling to optimize xylose fermentation in engineered Saccharomyces cerevisiae

四、有关DNA shuffling方面的文献：
22、Evolution of a Human Immunodeficiency Virus Type 1 Variant with Enhanced Replication in Pig-Tailed Macaque Cells by DNA Shuffling
Katja Pekrun, Riri Shibata, Tatsuhiko Igarashi, Margaret Reed, Liana Sheppard, Philip A. Patten, Willem P. C. Stemmer, Malcolm A. Martin, and Nay-Wei Soong
J. Virol., Mar 2002; 76: 2924 - 2935.

23、Improvement of the movement and host range properties of a plant virus vector through DNA shuffling.
RL Toth, GP Pogue, and S Chapman
Plant J, Jun 2002; 30(5): 593-600.

24、Development of metagenomic DNA shuffling for the construction of a xenobiotic gene.
H Boubakri, M Beuf, P Simonet, and TM Vogel
Gene, Jun 2006; 375: 87-94.

25、Functional Analysis of the Plant Disease Resistance Gene Pto Using DNA Shuffling
Adriana J. Bernal, Qilin Pan, Jeff Pollack, Laura Rose, Alexander Kozik, Neil Willits, Yao Luo, Muriel Guittet, Elena Kochetkova, and Richard W. Michelmore
J. Biol. Chem., Jun 2005; 280: 23073 - 23083.

26、DNA shuffling as a tool for protein crystallization
Robert J. Keenan, Daniel L. Siehl, Rebecca Gorton, and Linda A. Castle
PNAS, Jun 2005; 102: 8887 - 8892.

本人对这些文章进行了整理作成电子书,需要的虫友可下载:
http://pickup.mofile.com/3295301439891994

[ Last edited by zhjcao on 2008-3-20 at 20:26 ]

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