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分子生物学数据库大全
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分子生物学数据库大全 一.核酸及其相关数据库 1.核酸序列数据库 BIOSINO 我国的核酸序列公共数据库 EMBL - EMBL Nucleotide sequence database (EBI) * GenBank - GenBank Nucleotide Sequence database (NCBI) * DDBJ - DNA Data Bank of Japan * dbEST - Database of Expressed Sequence Tags (NCBI) dbSTS - Database of Sequence Tagged Sites (NCBI) 2.基因组及相关数据库 Genomic Databases GenomeWeb(HGMP) - A catalogue of useful Web sites for Genomics with a set of collections of genome databases GSDB - Genome Sequence database (NCGR) GOLD - Genomes On-line db 一些数据库的直接链接 DOGS - Database of Genome Sizes Genomics web site (John Wiley &Sons Ltd) (The Genomics website at Wiley is a new and DYNAMIC resourcefor the genomics community, offering FREE special feature articles andnew information EACH MONTH.) HUGO - HUman Genome Organization 3.核酸三维结构数据库 NDB - Nucleic Acid Databank (3D structures) BNASDB - Nucleic acid structure db from University of Pune 4 转基因数据库（Transgenics） Cre Transgenic Database - Cre transgenic mouse lines Transgenic/Targeted Mutation Database - Information on transgenic animals and targeted mutations 5.其他 AsDb - Aberrant Splicing db ACUTS - Ancient conserved untranslated DNA sequences db Codon Usage Db - The frequency of codon use in each organism is made searchable through this World Wide Web site. EPD - Eukaryotic Promoter db HOVERGEN - Homologous Vertebrate Genes db IMGT - ImMunoGeneTics db [Mirror at EBI] ISIS - Intron Sequence and Information System RDP - Ribosomal db Project gRNAs db - Guide RNA db PLACE - Plant cis-acting regulatory DNA elements db PlantCARE - Plant cis-acting regulatory DNA elements db sRNA db - Small RNA db ssu rRNA - Small ribosomal subunit db lsu rRNA - Large ribosomal subunit db 5S rRNA - 5S ribosomal RNA db tmRNA Website tmRDB - tmRNA dB tRNA - tRNA compilation from the University of Bayreuth uRNADB - uRNA db RNA editing - RNA editing site RNAmod db - RNA modification db TelDB - Multimedia Telomere Resource TRADAT - TRAnscription Databases and Analysis Tools Subviral RNA db - Small circular RNAs db (viroid and viroid-like) MPDB - Molecular probe db OPD - Oligonucleotide probe db VectorDB - Vector sequence db 二 基因表达数据库 ASDB - Protein products and expression patterns of alternatively-spliced genes Axeldb - Gene expression in Xenopus BodyMap - Human and mouse gene expression data EpoDB - Genes expressed in vertebrate RBC FlyView - Drosophila development and genetics Gene Expression Database (GXD) - Mouse gene expression and genomics Kidney Development Database - Kidney development and gene expression MAGEST - Ascidian (Halocynthia roretzi) gene expression patterns Mouse Atlas and Gene Expression Database - Spatially-mapped gene expression data PEDB - Normal and aberrant prostate gene expression Tooth Development Database - Gene expression in dental tissue TRIPLES - TRansposon-Insertion Phenotypes, Localization and Expression in Saccharomyces 三 蛋白质及其相关数据库 1.蛋白质序列和相关数据库 SWISS-PROT - SWISS-PROT annotated protein sequence db PIR-international -The Protein Information Resource (protein sequence) MIPS - Martinsried institute for protein sequence and homology data and yeast genome information PROSITE - PROSITE dictionary of protein sites and patterns InterPro - Integrated Resources of Proteins Domains and Functional Sites BLOCKS - BLOCKS db DOMO - Protein domain db (Automatically generated) Pfam - Protein families db (HMM derived) [Mirror at Sanger] PRINTS - Protein Motif fingerprint db ProDom - Protein domain db (Automatically generated) PROTOMAP - An automatic hierarchical classification of SWISS-PROT proteins SBASE - SBASE domain db (Protein domain sequence library) SMART - Protein signalling and extracellular domain patterns (Simple Modular Architecture Research Tool) ProClass - Protein sequence alignments and curation of protein families Kabat - Kabat db of protein of immunological interest PMD - Protein Mutant db 2.蛋白质三维结构和相关数据库 PDB - Protein Data Bank [Mirrors in EBI] BioMagResBank - Repository for data on proteins, peptides, and nucleic acids from NMR spectroscopy SWISS-MODEL Repository - Automatically generated protein models db ModBase - Db of comparative protein structure models CATH - UCL BSM structural classification of proteins SCOP - Structural classification of proteins [Mirror at USA | Israel | Singapore | Australia] Mol_R_Us - Molecules R Us, browser for PDB BMM Domain Server - Biomolecular Modelling Laboratory (ICRF) protein domain server PRESAGE - Collaborative resource for structural genomics ReLiBase - Receptor/ligand complexes db [Mirror in USA] TOPS - Protein topology atlas CCDC - Cambridge Crystallographic Data Center (Cambridge Stuctural Db (CSD)) HSSP - Homology-derived secondary structure of proteins db SWISS-3DIMAGE - 3D images of proteins and other biological macromolecules BioImage - Biological image db (contains imaging data on macromolecules) 3.蛋白质二维凝胶电泳数据库 WORLD-2DPAGE - A complete index of 2D-PAGE db and servers Phoretix links - Phoretix page of links to 2D gel db 4.信号传导及蛋白质-蛋白质相互作用相关数据库 DIP - Db of Interacting Proteins INTERACT - Protein-Protein interaction db ProNet - Protein-Protein interaction db CANSITE - Signal Transduction's Web SPAD - Signaling pathway db CSNDB - Cell Signaling Networks db 5.DNA和蛋白质相互作用数据库 DPInteract - DNA-Proteins interactions db 五 糖类相关数据库 CarbBank - Complex Carbohydrate Structure Database GlycoSuiteDB - Db of glycan structures TGN - The Glycoscience Network FCCA - Forum Carbohydrates Coming of Age CARBHYD - Carbohydrate information WWW sites Monosacharide browser - Space filling Fischer projection for monosaccharides 六 蛋白质翻译后修饰相关数据库 O-GlycBase - O-glycosylated proteins db PhosphoBase - Phosphorylation sites db RESID - Db of Amino Acid Modifications 七 人类基因突变及疾病相关数据库 HMGD - Human Gene Mutation db SVD - Sequence variation db HGBASE - Human Genic Bi-Allelic Sequences db The SNP consortium dbSNP - Human single nucleotide polymorphism (SNP) db List of mutation databases from OMIM List of mutation databases from IMT (Finland) ADB - Albinism db (Mutations in human genes causing albinism) Alpha-glucosidase - Information about human acid alpha-glucosidase (GSD-II) AR mutations - Human androgen receptor mutation db Antithrombin mutation db Asthma and Allergy gene db BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies BLMbase - Human BLM mutation db (Bloom snydrom) BTKbase - Human BTK mutation db (X-linked agammaglobulinemia) CD40Lbase - Human CD40 ligand mutation db COL1/3 mutation - Human Type I and III collagen mutation db CFTR mutation - Human cystic fibrosis mutation db (CFTR) EMD db - Human Emerin (EMD) mutation db (Emery-Dreifuss muscular dystrophy) KMeyeDB - Eye disease genes db FVII mutation - Human Factor VII mutation db HAMSTeRS - Human Factor VIII mutation db (Haemophilia A) HAeMB - Human Factor IX mutation db (Haemophilia B) FBN1 mutation - Human fibrillin 1 mutation db (Marfan syndrome) G6PD - Human G6PD deficiency resource Galt mutation - Human galactose-1-phosphate uridylyltransferase mutation db (Galactosemia) HEXAdb - Human Hexosaminidase A mutation db (Tay-sachs disease) IL2RGbase - Human IL2RG (Interleukin-2 receptor gamma) mutation db (X-SCID) L1CAM mutation - Human L1CAM mutation db LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia) LQTSdb - Long QT syndrome db NCF1base - Human NCF1 mutation db NCF2base - Human NCF2 mutation db Neuromuscular diseases web site NCL - Neuronal Ceroid Lipofuscinoses mutation db OTCase - Human ornithine transcarbamylase (OTCase) website Cytochrome P450 alleles nomenclature p53 mutation db - University of Tokyo p53 mutation db Germline p53 mutation db - University of Prague db of germline p53 mutations PAHdb - Human phenylalanine hydroxylase (PAH) mutation db PAX6 mutation - Human PAX6 mutation db Prion - Prion and prion disease web site RAG1base - Human RAG1 mutation db RAG2base - Human RAG2 mutation db RB1base - Human retinoblastoma-associated protein (RB) mutation db RetNet - Retinal Information Network Retina International Scientific Newsletter - Information on Retinal genes, proteins and diseases TSC - TSC (TSC1/TSC2) variation db TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS) db (Tuberin; TSC2) TGDB - Tumor gene db VMD2 mutation - Human VMD2 mutation db vWF mutation - Human von Willebrand factor (vWF) mutation db WRN - Human WRN mutation db (Warner disease) WT1 mutation - Human WT1 mutation db X-ALD mutation - Human ABCD1 mutation db 八 进化相关数据库及资源 Clusters of Orthologous Groups (COG) - Phylogenetic classification of proteins from 21 complete genomes XREFdb - Cross-referencing of model organism genetics with mammalian phenotypes TreeBASE - Relational db of phylogenetic information The Tree of life - Collection of WWW pages on phylogeny and biodiversity of organisms 九 专利数据库 DPD - DNA Patent db Ag Patents - Agricultural Biotechnology patents from the USDA USPTO patent db - USA Patent and Trademark Office patent db [email=Esp@cenet]Esp@cenet[/email] - Patent information database from the European Patent Office (worldwide coverage) The Delphion Intellectual Property Network (IPN) for searching, viewing, and analyzing patent documents |
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