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汕头大学海洋科学接受调剂
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lei0736

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[资源] 分子模拟的电子书及讲义(链接已经失效,等待重新上传)

1. computer simulation of liquid

不用介绍了吧^_^
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文件名:M.P.Allen---computer simulation of liquid.pdf 附带程序:computer simulation of liquid.zip


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因为有网友反应爱存 网盘(isload.com.cn)速度已经不令人满意了,本人上传时也发现确实如此,因此3月9号开始的书籍会上传到新申请的空间里(即http://www.fs2you.com/zh-cn/),之前的14本也会重新上传(爱存里已经上传的不会删除),并且直接给出下载地址,这个网盘里的文件账户健康指标:到100就会自动删除,请大家踊跃下载,保持活跃度。万一链接失效请及时PM我以便重新上传更新链接。另外4月15号统计,本帖已经有超过2800次的访问量了,同时文件账户健康指标到200了 希望大家踊跃下载啊不然就自动删除了;而本帖的回帖只有寥寥十几,希望大家各取所需的同时也顶一次,呵呵,增加信心!

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computer simulation of liquid.zip 新链接:http://www.fs2you.com/files/69a170a6-eddf-11dc-93a7-0014221b798a/

M.P.Allen---computer simulation of liquid.pdf  新链接:
http://www.fs2you.com/files/ab527619-ede1-11dc-a33a-0014221f3995/

——————————————————————————————————————

想不到fs2you也挂的这么快 锋芒太露啊
有时间我会重新上传
大家推荐一下快速稳定的网盘


[ Last edited by lei0736 on 2008-9-5 at 10:05 ]
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lei0736

荣誉版主 (职业作家)


3. Introduction to Modeling and Simulation讲义

文件名: MIT spring2006---Introduction to Modeling and Simulation.pdf
有兄弟发的类似的
见以下帖子:
http://www.muchong.com/bbs/viewthread.php?tid=725838&pid=6295878&page=1#pid6295878

我这个是2006年的 貌似最新最全的吧 主讲有Prof. S. Yip等牛人

新链接:http://www.fs2you.com/files/56bc149c-ede3-11dc-ac3c-0014221b798a/

[ Last edited by lei0736 on 2008-3-9 at 22:16 ]
3楼2008-03-05 21:29:32
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查看全部 181 个回答

lei0736

荣誉版主 (职业作家)


2. The Art of Molecular Dynamics Simulation

文件名:D C Rapaport---The Art of Molecular Dynamics Simulation.pdf

新链接:http://www.fs2you.com/zh-cn/file ... -80a5-0014221f4662/


【作者】Dennis C Rapaport

【出版者】Cambridge University Press

【出版日期】1995

【价格】£29.95

【ISBN】0521599423

【主要内容】
     This book describes the extremely powerful technique of molecular dynamics simulation, which involves solving the classical many-body problem in contexts relevant to the study of matter at the atomic level. The method allows the prediction of the static and dynamic properties of substances directly from the underlying interactions between the molecules. Because there is no alternative approach capable of handling such a broad range of problems at the required level of detail, molecular dynamics methods have proved themselves indispensable in both pure and applied research. This volume will be of value to advanced students and researchers in physics, chemistry, polymer science and materials science in universities and industrial laboratories.

Contents
Preface

1 Introduction

2 Basic MD approach
soft-disk fluid, methodology, programming, equilibration, sample results.

3 Simulating simple systems
equations of motion, potential functions, interaction computations, integration methods, initial state, efficiency, trajectory sensitivity.

4 Equilibrium properties of simple fluids
thermodynamics, structure, Voronoi polyhedra, clusters.

5 Dynamical properties of simple fluids
transport coefficients, space-time correlation functions.

6 Alternative ensembles
feedback and constraint methods for constant temperature and pressure.

7 Nonequilibrium dynamics
homogeneous and inhomogeneous systems, sheared flow, heat transport.

8 Rigid molecules
dynamics, molecular construction, water, properties, hydrogen bonds.

9 Flexible molecules
polymer chains, properties.

10 Geometrically constrained molecules
solving the constraint problem, internal forces, alkane chains, properties.

11 Other interactions
long-range forces, three-body potentials, dipole fluid, liquid silicon.

12 Step potentials
computational scheme, events, results, generalizations.

13 Time-dependent phenomena
open systems, thermal convection, obstructed flow.

14 Algorithms for supercomputers
MD algorithms for distributed- and vector-processing computers.

15 The future

Appendices
data management, organizing extensive computations, utility functions, list of variables.

Bibliography

Indices
function index, subject index.

[ Last edited by lei0736 on 2008-3-9 at 22:12 ]
2楼2008-03-05 21:23:36
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lei0736

荣誉版主 (职业作家)


4. Understanding Molecular Simulation From Algorithms to Applications

文件名:
D.Frenkel---Understanding Molecular Simulation From Algorithms to Applications.rar
包含中文两本,及配套练习,程序

ISBN: 0122673700
Title: Understanding Molecular Simulation: From Algorithms to Applications 1996-08
Author: Daan Frenkel, Berend Smit
Publisher: Academic Press
Publication Date: 1996-08
Number Of Pages: 443
Average Amazon Rating: 4.5
Summary:
Computer simulation techniques have become almost essential in the study of the macro-molecular phenomena and phase behavior on the molecular level. As these techniques become increasingly important, it is necessaryto realize that they are useful tools, but are not the goals of research. With this important distinction in mind, Understanding Molecular Simulation describes simulation techniques along with the physics behind the phenomena that these techniques simulate.
Each chapter is comprised of three components: the general theoretical basis, an outline of the necessary computer code, and a few applications which illustrate the use of the technique demonstrated. The chapters also include examples of the typical practical problems that could be solved using each technique.

Key Features
* Gives a unified presentation of computational tools used to study molecular systems in the equilibrium state
* Describes simulation techniques and physics behind the phenomena simulated
* Emphasizes important topics of phase behavior and computer simulation of macro-molecular (polymer-type) substances
* Includes references to the authors home page where additional information from the authors can be found


有虫子发过 http://muchong.com/html/200608/297413.html
,呵呵,为了方便大家我集中再发一遍

中文版:
http://www.fs2you.com/files/b6416c40-ede4-11dc-9086-0014221b798a/
英文版:
http://www.fs2you.com/files/8677f10a-ede4-11dc-8636-0014221f3995/
附带程序和练习:
http://www.fs2you.com/files/77651678-ede4-11dc-aa17-00142218fc6e/
http://www.fs2you.com/files/e2f7989c-ede4-11dc-92b9-0014221f4662/


[ Last edited by lei0736 on 2008-3-9 at 22:28 ]
4楼2008-03-05 21:41:41
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lei0736

荣誉版主 (职业作家)


5. Statistical Mechanics - Algorithms and Computations

文件名:
Statistical Mechanics - Algorithms and Computations, Krauth, Oxford 2006.pdf

主要讲MC算法,浅显

Description
This book discusses the computational approach in modern statistical physics in a clear and accessible way and demonstrates its close relation to other approaches in theoretical physics. Individual chapters focus on subjects as diverse as the hard sphere liquid, classical spin models, single quantum particles and Bose-Einstein condensation. Contained within the chapters are in-depth discussions of algorithms, ranging from basic enumeration methods to modern Monte Carlo techniques. The emphasis is on orientation, with discussion of implementation details kept to a minimum. Illustrations, tables and concise printed algorithms convey key information, making the material very accessible. The book is completely self-contained and graphs and tables can readily be reproduced, requiring minimal computer code. Most sections begin at an elementary level and lead on to the rich and difficult problems of contemporary computational and statistical physics. The book will be of interest to a wide range of students, teachers and researchers in physics and the neighbouring sciences. An accompanying CD allows incorporation of the book's content (illustrations, tables, schematic programs) into the reader's own presentations.
Reviews
"This book is the best one I have reviewed all year."-- Physical Sciences Educational Reviews

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新链接
http://www.fs2you.com/files/8eabfdae-ede5-11dc-8b4e-0014221f3995/


[ Last edited by lei0736 on 2008-3-9 at 22:32 ]
5楼2008-03-05 21:47:35
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