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µ°°×ÖÊÐòÁзÖÎö Compute pI/Mw- http://www.expasy.ch/ch2d/pi_tool.html£¨is a tool which allows the computation of the theoretical pI(isolectric point) and Mw (molecular weight) for a list of SWISS-PROTentries or for a user entered sequence£©µ°°×ÖÊÐòÁеÄÀíÂ۵ȵçµã¡¢·Ö×ÓÁ¿µÄ¼ÆËã CATH- http://www.biochem.ucl.ac.uk/bsm/cath£¨Protein Structure Classification CATH is a hierarchicalclassification of protein structural relationships derived using acombination of automatic and manual methods. CATH identifies thedifferent groups in the classification by a unique CATH number, as wellas a descriptive name£© ͨ¹ý×Ô¶¯¡¢ÊÖ¶¯·½Ê½½øÐе°°×ÖʽṹÏà¹ØÐÔµÄϵͳ·ÖÀ࣬ CATHÊÇÒÔÏÂËĸöµ¥´ÊµÄµÚÒ»¸ö×ÖĸµÄ×éºÏ ClassÀà ¡ª¡ª£¨The highest level of the classification, derived from gross secondary structure content£© Ô´ÓÚ¶þ¼¶½á¹¹µÄ×î¸ß¼¶±ðµÄ·ÖÀà Architecture¹¹Ô졪¡ª£¨ Description of the gross arrangement of secondary structures. Independent of topology£©¶ÀÁ¢ÓÚÍØÆË½á¹¹µÄ¶þ¼¶½á¹¹ÅÅÁÐÃèÊö¡£ TopologyÍØÆË½á¹¹¡ª¡ª£¨ Topological description, with reference to previously observed structures and well-known folds£©²ÎÕÕÒÑÖªµÄÕÛµþ¼°¹Û²âµÄ½á¹¹½øÐÐÍØÆË·ÖÎö Homology ͬԴ¡ª¡ª£¨ Discriminationbetween structures with same topology, but more diverse structuresOften correlates with functional homology£©½á¹¹¼äÏàͬµÄÍØÆË²¼¾Ö¡¢²»Í¬µÄ¶þ¼¶½á¹¹£¨Ó빦ÄÜÏàËÆÐÔÏà¹Ø£©ÃèÊö CRASPhttp://wwwmgs.bionet.nsc.ru/Programs/CRASP/default.htm Correlation Analysis of Sequences of Proteins µ°°×ÖÊÐòÁеÄÏà¹Ø·ÖÎö FPAThttp://www.ibc.wustl.edu/fpat/-an easy way to search a molecular sequence database for patterns. ¼ìË÷·Ö×ÓÐòÁÐÊý¾Ý¿âģʽµÄ¼òÒ×·½·¨ Hydropathy Plot (GIF image) http://www.bmb.psu.edu/nixon/webtools/hydro/default.htm - for the drawing of hydropathy plot. »æÖÆÇ×Êèˮͼ MOTIF http://www.genome.ad.jp/SIT/MOTIF.html- Search Patterns in Protein Sequences µ°°×ÖÊÐòÁÐģʽ¼ìË÷ RandSeq http://www.expasy.ch/sprot/randseq.html- Random protein sequence generator Ëæ»úµÄµ°°×ÖÊÐòÁÐÉú³¤×Ó REPRO- http://www.embl-heidelberg.de/repro/repro_info.htmlA service for the recognition of protein sequence repeatsµ°°×ÖÊÖØ¸´Æ¬¶Ïʶ±ð·þÎñÆ÷ SALSA-http://dna.uio.no/salsa/ Search DNA and Protein Databases for Sequence Similarities µ°°×ÖÊ¡¢ºËËáÐòÁÐÏàËÆÐÔ¼ìË÷ SignalPhttp://www.cbs.dtu.dk/services/SignalP/ ÔÚ²»Í¬µÄÎïÖÖÖÐÔ¤²âÐźÅëļ°Ã¸ÇÐλµã SIM-http://expasy.hcuge.ch/sprot/sim-prot.html ÓÉÓû§¶¨ÒåµÄ×î¼ÑÁ½ÐòÁÐ¶Ô±È TMpredhttp://ulrec3.unil.ch/software/TMPRED_form.html - µ°°×ÖÊ¿çÄ£ÇøÔ¤²â¡¢¶¨Î»£¬¸Ã·½·¨»ùÓÚͳ¼ÆÑ§½á¹û£¬Í¨¹ýÈ¨ÖØ¾ØÕó´ò·Ö½øÐÐÔ¤²â·ÖÎö Coils http://ulrec3.unil.ch/software/COILS_form.html- ¶Ô±È·ÖÎö¾ßÓÐË«¹É¾íÇú½á¹¹µÄÐòÁÐͬԴÐÔ´ò·Ö£¬½ø¶ø¼ÆËãÊÊÓÚ²ÉÓøýṹµÄÐòÁеļ¸ÂÊ GuessProt http://www.expasy.ch/www/guess-prot.html- Ñ¡ÔñSwissProtµ°°×µÄµÈµçµã¡¢·Ö×ÓÁ¿ MassSearch http://cbrg.inf.ethz.ch/subsection3_1_3.html- µ°°×ÖÊÏû»¯ºóµÄ¾Û¼¯¼ìË÷ Phospepsorthttp://genome.eerie.fr/gcg/phospepsort-query.html - Á×Ëữλµã·ÖÀà SAPS http://ulrec3.unil.ch/software/SAPS_form.html- µ°°×ÖÊÐòÁÐͳ¼Æ·ÖÎö Sleuth http://www.bioon.com/molebio/pro ... du/pub/sleuth/data- °±»ùËá¹¹Ï󼰿ɼ°ÐÔ·ÖÎö PEDANT-http://pedant.mips.biochem.mpg.de/frishman/pedant.html µ°°×ÖÊÌáÁ¶ PROVE http://www.ucmb.ulb.ac.be/%7Ejoan/survol/form.html- µ°°×ÖÊÔ×ÓÌå»ý¼ÆËã Naccess (ASA for proteins) http://sjh.bi.umist.ac.uk/naccess.html ÀûÓÃLee & Richards·½·¨ÃèÊö·Ö×Ó±íÃæÐÔÖʵļÆËã³ÌÐò£¬Äܹ»¼ÆËãµ°°×ÖʵıíÃæ¿É¼°ÐÔ ÓÐÓñðÍüÁËÖ§³Öһϣ¬Ð»Ð» [ Last edited by shining-rose on 2008-1-25 at 09:56 ] |
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