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【转载】我自己整理的蛋白质组学、基因组学和肿瘤学的网址【已搜索无重复】
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蛋白质组学资料 一些蛋白组学的文件 http://www.dxy.cn/bbs/post/view? ... amp;tpg=1&age=0 蛋白质功能与生物进化的关系 http://www.dxy.cn/bbs/post/view? ... amp;tpg=1&age=0 使用肽指纹图谱进行数据库搜索 http://www.dxy.cn/bbs/post/view? ... amp;tpg=1&age=0 共同学习ICAT－蛋白组的方向 http://www.dxy.cn/bbs/post/view? ... amp;tpg=1&age=0 分析蛋白质之间的相互作用 http://www.dxy.cn/bbs/post/view? ... amp;tpg=1&age=0 新蛋白发现和预测 http://www.dxy.cn/bbs/post/view? ... amp;tpg=1&age=0 蛋白质组研究中常用的数据库 http://www.bio-soft.net/ 蛋白质组研究中常用的数据库.pdf (34.41k) 常用在线蛋白质工具 常用在线蛋白工具.pdf (23.64k) 蛋白质分析"学习网站 1.http://www.ebi.ac.uk/2can/tutorials/ 2.http://www.bioinf.man.ac.uk/dbbrowser/bioactivity/prefacefrm.html "中国医学生物信息"网站收集整理的生物医学数据库的相关文献，并进行了简单的分析统计，试图从中找到一些生物医学数据库发展的趋势，为国内该领域的发展做一些工作，引起各方面对该领域的重视。同时对相关文献进行分类整理，收录了2003年的数据库目录和介绍2003年有所变化数据库的相关文献与最新报道，供读者参考。有大量的关于各个数据库详细介绍的PDF文档可以直接下载。感兴趣的战友不妨去看看。地址是： http://cmbi.bjmu.edu.cn/news/rep ... 03/database2003.htm 基因组学 关于反向遗传学 http://www.dxy.cn/bbs/post/view? ... amp;tpg=1&age=0 人cDNA文库 http://www.dxy.cn/bbs/post/view? ... amp;tpg=1&age=0 全长cDNA文库的构建 http://www.dxy.cn/bbs/post/view?bid=64&id=8685&sty=1 膜蛋白结构研究方法新进展 http://www.dxy.cn/bbs/post/view? ... amp;tpg=1&age=0 biodna主任的工具箱 [Archived] http://www.dxy.cn/bbs/post/view?bid=87&id=437547&sty=1 密码子表 http://www.takara.com.cn/product/fl/i_2.htm Codon Tables http://biocommons.bcc.washington ... nslator/codons.html Alphabetical lists of all organisms http://www.kazusa.or.jp/codon/ The list of Parasite Codon Tables http://www.ebi.ac.uk/parasites/cutg.html PCR引物（寡核苷酸）计算器 http://www.bioguider.com/bio/technique/pcr.htm The Restriction Enzyme Database http://rebase.neb.com/rebase/ DNA Sequence Translator http://biocommons.bcc.washington ... ware/dnatranslator/ http://www.microbiology.adelaide.edu.au/learn/orf_pred.htm http://arete.ibb.waw.pl/PL/html/translation-um.html Find gene/protein information, protein domain/motif diagrams, exon/intron diagrams, related sequences, mutants Motif/Domain Search & Scan http://plantsp.sdsc.edu/plantsp/html/advanced_search.html AFCS: Nature signaling-gateway & Protocols http://www.dxy.cn/bbs/post/view? ... 1&age=30#979050 基因研究大全-演讲,录象,动画: http://www.dxy.cn/bbs/post/view? ... amp;tpg=1&age=0 基因组演讲 http://www.hhmi.org/biointeractive/genomics/lectures.html 文章 http://www.hhmi.org/biointeractive/genomics/articles.html 基因组和chip实验操作录象 http://www.hhmi.org/biointeractive/genomics/video.html 动画 http://www.hhmi.org/biointeractive/genomics/animations.html 基因活性研究的powerpoint: http://www.dxy.cn/bbs/post/view? ... amp;tpg=1&age=0 http://insomniac.botany.uga.edu/3300/geneact_files/frame.htm http://insomniac.botany.uga.edu/3300/genomeequiv_files/frame.htm http://insomniac.botany.uga.edu/3300/devgenetics_files/frame.htm http://www.dxy.cn/bbs/post/page? ... amp;tpg=1&s=359 A-C Bioinformatics 2003 年题录 BMC Bioinformatics 2003 年题录 BMJ 2003 年题录 F-I FASEB journal 2003 年题录 Genes & Development 2003 年题录 Genome Research 2003 年题录 Human Molecular Genetics 2003 年题录 J-L J BioinforComputl Biol 2003 年题录 M-N Nature 2003 年题录 Nature biotech 2003 年题录 Nature Genetics 2003 年题录 Nature Structl Biol 2003 年题录 Nucleic Acids Research 2003 年题录 O-Z P.N.A.S 2003 年题录 Science 2003 年题录 The EMBO Journal 2003 年题录 肿瘤学 代谢pathway http://cgap.nci.nih.gov/Pathways/Kegg_Standard_Pathways http://www.genome.ad.jp/kegg/kegg2.html http://cn.expasy.org/cgi-bin/show_thumbnails.pl Enzymes and Metabolic Pathways database, EMP http://www.empproject.com/about/ 信号pathway http://www.biocarta.com/genes/index.asp http://cgap.nci.nih.gov/Pathways/BioCarta_Pathways Cellular and Molecular Processes http://cn.expasy.org/cgi-bin/show_thumbnails.pl?2 Signaling Pathway Database http://www.grt.kyushu-u.ac.jp/spad/index.html Protein identification and characterization DNA -> Protein Similarity searches Pattern and profile searches Post-translational modification prediction Topology prediction Primary structure analysis Secondary structure prediction Tertiary structure Sequence alignment Biological text analysis http://cn.expasy.org/tools/#proteome CancerGene Database http://caroll.vjf.cnrs.fr/cancergene/RETRI1.html Tumor Gene Database http://tgdb.biomedcomp.com/4d.acgi$tDoSrchTGDB CancerGene Bibliographic Citations http://caroll.vjf.cnrs.fr/cancergene/RETRI2.html GeneCards™ is a database of human genes, their products and their involvement in diseases. It offers concise information about the functions of all human genes that have an approved symbol, as well as selected others. http://bioinfo.weizmann.ac.il/cards/index.html geneid server is the web server to geneid, a program to predict genes, exons, splice sites and other signals along a DNA sequence. Visit geneid homepage for more information about this program. http://www1.imim.es/geneid.html Genie is a gene identification tool originally developed at the University of California, Santa Cruz. The program uses a Hidden Markov Model (HMM) as a high-level grammar representing gene structure. It uses statistical methods and neural networks to model different gene structures, e.g. codons, splice site boundaries, etc. http://www.cse.ucsc.edu/~dkulp/cgi-bin/genie 肿瘤学数据库 http://www.dxy.cn/bbs/post/view? ... mp;tpg=1&age=-1 辞典 onelook Dictionary Search http://www.onelook.com/ list of wwftd's http://home.mn.rr.com/wwftd/abc.htm#A 多语种互译 http://dictionary.reference.com/translate/text.html dictionary-on-line http://www.dictionary-on-line.us/ Cancer.gov Dictionary http://www.nci.nih.gov/dictionary/ cancer glossaries and cancer dictionaries http://www.glossarist.com/glossa ... -fitness/cancer.asp medical-dictionary-search-engines－cancer http://medical-dictionary-search-engines.com/cancer/ Cancer Dictionary http://www.sunsmart.com.au/s/wordbook/ Cancer Dictionary http://www.cancervic.org.au/cancer1/patients/wordbook/index.html Mult－Medical Dictionary－Medical Dictionary http://www.hyperdictionary.com/dict-m/s-7.html The Dictionary of Cell and Molecular Biology - Online! http://www.mblab.gla.ac.uk/~julian/dict2.cgi? 肿瘤相关词汇 http://www.ccc.saci.org/PatientServices/glossary.htm 软件集合 Linkage and Mapping Software http://bip.weizmann.ac.il/repository/mapping_software.html SWBIC bioinformatics related tools集合 http://www.swbic.org/links/browse.php NUCLEOTIDE SEQUENCES EasyGene Genes in prokaryotes. GenePublisher Analysis of DNA microarray data. GenomeAtlas DNA structural atlases for complete chromosomes and genomes. HMMgene Genes in eukaryotes. NetGene2 Intron splice sites in human, C. elegans and A. thaliana DNA. NetPlantGene Intron splice sites in Arabidopsis thaliana DNA. NetStart Translation start in vertebrate and A. thaliana DNA. OligoWiz Design of oligonucleotides for DNA microarrays. Promoter Transcription start sites in vertebrate DNA. AMINO ACID SEQUENCES ArchaeaFun Enzyme/non-enzyme and enzyme class (Archea). ChloroP Chloroplast transit peptides and their cleavage sites in plant proteins. CPHmodels Protein structure from sequence: distance constraints. DictyOGlyc O-(alpha)-GlcNAc glycosylation sites (trained on Dictyostelium discoideum proteins). distanceP Protein distance constraints. NetChop Proteasomal cleavages (MHC ligands). NetNGlyc N-linked glycosylation sites in human proteins. NetOGlyc O-GalNAc (mucin type) glycosylation sites in mammalian proteins. NetPhos Serine, threonine and tyrosine phosphorylation sites in eukaryotic proteins. NetPicoRNA Posttranslational cleavage by picornaviral proteases. ProtFun Protein functional category and enzyme class (Eukarya). RedHom Reduction of sequence similarity in a data set. SignalP Signal peptide and cleavage sites in gram+, gram- and eukaryotic amino acid sequences. TargetP Subcellular location of proteins: mitochondrial, chloroplastic, secretory pathway, or other. TMHMM Transmembrane helices in proteins. YinOYang O-(beta)-GlcNAc glycosylation and Yin-Yang sites (intracellular/nuclear proteins). LipoP Prediction of Signal pepsidase I & II clevage sites in Gramnegative bacteria http://www.cbs.dtu.dk/services/ Radiation Hybrid Mapping http://www-shgc.stanford.edu/Mapping/index.html RH Server http://www-shgc.stanford.edu/RH/index.html Genomic finishing protocols library construction BAC sequencing protocol http://www-shgc.stanford.edu/Seq/methods/mainmethod.html http://www.blocks.fhcrc.org Carnet d'Adresses Bioinformatiques / Collection of Addresses for Bioinformatics Tree-based consistency Objective Function for alignment Evaluation The Phylogenomy of Bacterial Proteins FusionDB is a database of bacterial and archaeal gene fusion events Structural Genomic Projects:BIGS Tropheryma whipplei genome database Rickettsia Genome Database Gelprint:In Silico 2D-PAGE Significance of digital gene expression profiles Cardiac Gene Database http://igs-server.cnrs-mrs.fr/ The Baylor College of Medicine Search Launcher is an on-going project to organize molecular biology-related search and analysis services available on the WWW by function by providing a single point-of-entry for related searches (e.g., a single page for launching protein sequence searches using standard parameters). http://dot.imgen.bcm.tmc.edu/ BCM Protein Structure Prediction BCM Gene Finder BCM Human Transcript Database Protein Structure Prediction Sequence Utilities Gene Features Searches Pairwise Sequence Alignment Multiple Sequence Alignment Species Protein Search General Protein Search Nucleic Acid Search 实验动物学 http://www.37c.com.cn/literature ... ame=095/default.htm 实验动物学 http://www.windrug.com/book/book28.php Experimental Animal database http://www.grs.nig.ac.jp/animal/animal1.html http://www.brc.riken.go.jp/lab/animal/catalogue.html Environmental Enrichment Information Resources for Laboratory Animals http://www.nal.usda.gov/awic/pubs/enrich/ 两个常用的经典细胞株站点： 本土---中国典型培养物保藏中心(China Center for Type Culture Collection, CCTCC) http://www.cctcc.org/ 美国---American Type Culture Collection (ATCC) http://www.atcc.org/ Protocol Online Directory of research protocols in a variety of bioscience fields. Also hosts discipline-specific discussion forums. http://www.protocol-online.org iProtocol for Bioscience Real-time database for researchers to share protocols used in nearly all biological disciplines http://iprotocol.mit.edu BioProtocol, Inc. Quality life science protocols for free: Molecular biology, neurobiology, developmental biology, cell biology, microbiology, plant biology, and biochemistry. http://www.bioprotocol.com/ BioWWW.net Comprehensive collection of lab troubleshooting resources, newsgroups and protocols in molecular biology, cell biology, immunology, genetics and biochemistry. http://biowww.net/ Methods and Protocols A collection of links to protocols used in biosciences. http://www.bioexplorer.net/Methods_and_Protocols/ Intracellular Staining using Flow Cytometry Used to analyze suspensions regarding to size, surface and intracellular phenotype. http://home.wanadoo.nl/flowcytometry/ Flow Cytometry on the Web Listing of WWW resources devoted to flow cytometry. http://pingu.salk.edu/fcm/sitelink.html 肿瘤临床试验相关网站整理: The database of Canadian cancer trials of the National Cancer Institute of Canada Clinical Trials Group (NCIC CTG) www.ctg.queensu.ca The Physician Data Query (PDQ) Clinical Trials Database of the US National Cancer Institute www.cancer.gov/search/clinical_trials ClinicalTrials.gov www.clinicaltrials.gov CenterWatch.com Web site www.centerwatch.com/search.asp Current Controlled Trials www.controlled-trials.com/mrct Cancer411－org www.cancer411.org/clinicaltrials/index.asp The bettercancercare.com Web site www.bettercancercare.com The MediStudy.com Web site www.medistudy.com/clinical_trials/index.html http://cancertrials.nci.nih.gov/ www.cancertrialshelp.org/ 肿瘤临床试验类文章发表频率较高的杂志： Cancer Research Clinical cancer Research JNCI:Journal of the National Cancer Institute NEJM:The New England Journal of Medicine JCO:Journal of Clinical Oncology Lancet Br J Cancer:British Journal of Cancer Endocrine-Related Cancer Breast cancer research and treatment Seminars in oncology Oncology related postdoctoral position 可搜索postdoctoral postion的站点 Science careers http://recruit.sciencemag.org/ Nature http://www.nature.com/naturejobs/ Cell http://jobs.cell.com/ Postdoc Jobs http://www.post-docs.com/ University Job Bank website http://www.ujobbank.com/ Positions available at NIH http://www.training.nih.gov/ the Royal Society http://www.royalsoc.ac.uk/ EMBL http://www.embl-heidelberg.de/ExternalInfo/jobs/ Biomednet http://www.biomednet.com/jobs/ Search for latest Jobs http://www.informatik.uni-rostock.de/HUM-MOLGEN/positions/ dnajobs http://www.dnajobs.com/ Biomedscientistjobs http://www.biomedscientistjobs.com/ HUM-MOLGEN www.hum-molgen.de Lancet http://www.thelancet.com/cgi-bin ... p;pg=jobsearch.html Kelly Scientific Resources http://www.kellyscientific.com/ Jobs advertised in The Scientist http://www.the-scientist.library.upenn.edu/ The BIOCareer Center http://www.biocareer.com/ Personnelnet Health http://www.personnelnet.com/ The Monster Board http://www.monster.com/ Monster Healthcare Careers on the Web http://www.monsterhealthcare.com/ ETZH TeleJob http://www.telejob.ethz.ch/ Frontiers in Bioscience: Jobs in Biology http://www.bioscience.org/urllists/jobs.htm Bio Online Career Center http://bio.com/hr/job/ International Pharmajobs http://www.pharmajobs.com/ JobBank USA http://www.jobbankusa.com/search.html New Scientist http://www.sciencejobs.com/ Academia http://www.psy.anu.edu.au/academia Experimental Medical Job Listing http://www.medcor.mcgill.ca/EXPMED/DOCS/jobs.html Medzilla http://www.medzilla.com/index.html Medsearch http://www.medsearch.com/ The Drug Information Association http://www.diahome.org/employment/employ1.htm The Chronicle of Higher Education http://chronicle.com/jobs The Federation of American Societies for Experimental Biology http://www.faseb.org/careers/ The Online Career Center http://www.occ.com/ bionet.jobs.offered Newsgroup Archive http://www.bio.net/hypermail/EMPLOYMENT/ Physicians Employment http://www.physemp.com/ Genome Jobs http://www.genomejobs.com/ Campus Review http://www.camrev.com.au/share/jobs.html The Medical Library Association http://www.mlanet.org/jobs/ Academic Positions in Science: The First Worldwide Register http://www.anu.edu.au/psychology/Academia/ Career Mosaic http://www.careermosaic.com/cm/jobs.html Jobsite UK http://www.jobsite.co.uk/regnow.html Chemistry & Industry http://ci.mond.org/jobs/ The British Medical Journal http://classified.bmj.com/ Employment Resources for the Biomedical Scientist http://www.his.com/~graeme/employ.html SciWeb http://www.sciweb.com/directories/dir_jobs.html The Riley Guide http://www.dbm.com/jobguide Creative Job Search http://www.des.state.mn.us/cjs/cjs_site/cjsbook2/cjsbook.htm Career Development Manual http://www.adm.uwaterloo.ca/infocecs/CRC/manual-home.html Employment Projections (U.S.) http://stats.bls.gov/emptab0.htm Birkman Career Style Summary (Princeton career quiz) http://www.review.com/birkman/ JobWeb - Guide to Resume Writing http://www.jobweb.org/catapult/guenov/restips.html Tripod Resume Web Resources http://www.tripod.com/explore/jobs_career/resume/linklist.html JobSmart - salary index & cost of living http://jobsmart.org/tools/salary/index.htm Hoover's Online http://www.hoovers.com/ Vault.com http://www.jobvault.com/ 整理后的postdoctoral postion搜索原则以共勉 1. 以上站点中检索； 2. 大学主页-找相关的资源，很多大学都有，大多都具站内搜索功能，甚至提供更多的资源； 3. 各机构主页-找相关的资源，可于站内搜索，比如NIH，EMBL之类的研究机构或自己领域熟悉的机构； 4. GOOGLE搜 ，常见的检索词为“postdoctoral postion” “postdoctoral +postion”等，亦可配合GOOGLE的高级功能，如inurl、allinurl、site:edu或edu.*或COM之类的,link:或filetype:pdf有时也极为管用； 5. 砖头杂志感兴趣文章的通讯作者所在学校/机构一般不会让人失望； 6. 如果老板有熟悉的地方，就不必说了 Stanford大学Pat Brown's lab－基因芯片相关Experimental Protocols DNA Preparation Slide Preparation RNA amplification Nucleic Acid Preparation Nucleic Acid Labeling Array Post Processing Array Hybridization Miscellaneous http://cmgm.stanford.edu/pbrown/protocols/ The Brown Lab's complete guide to microarraying for the molecular biologist. http://cmgm.stanford.edu/pbrown/mguide/index.html SMD Microarray Links : Software & Tools http://genome-www5.stanford.edu//restech.html EisenSoftware http://rana.lbl.gov/EisenSoftware.htm stabford microarray http://genome-www5.stanford.edu// http://nar.oupjournals.org/cgi/content/full/29/1/152 Yale Microarray http://info.med.yale.edu/microarray/ a links http://ihome.cuhk.edu.hk/~b400559/array.html Microarrays.org http://www.microarrays.org/index.html ArrayExpress http://www.ebi.ac.uk/Databases/microarray.html http://www.ebi.ac.uk/microarray/ Public Microarray Database and Gene Expression Database http://ihome.cuhk.edu.hk/~b400559/arraysoft_public.html Microarray Gene Expression Data (MGED) Society http://www.mged.org Gene Expression Omnibus GEO http://ncbi.nlm.nih.gov/geo the RNA Abundance Database http://www.cbil.upenn.edu/RAD2/ Plasmodium Genome Database http://PlasmoDB.org Gene Expression Data Explorer http://61.218.37.60/microarray.html Penn State Microarray Database http://posnania.biotec.psu.edu/services/microarray_db.html MicroArray Database http://innovation.swmed.edu/microarray_database.htm Xenopus Microarray Database http://arrays.rockefeller.edu/xenopus/DB_review_experiment.htm related Exercises http://www.ch.embnet.org/CoursEMBnet/CHIP02/Exercises/ Oligo Microarray Database http://omad.qiagen.com/human2/index.php Chromosome 22 Microarray Database http://array.mbb.yale.edu/chr22/ Illinois Microarray Database http://titan.biotec.uiuc.edu:8888/expresso/imad/index.jsp ExpressDB Information Page http://arep.med.harvard.edu/ExpressDB/ Index page of Pathology Microarray Database http://yale130132115135.med.yale.edu/ UC Santa Cruz's Microarray database http://mdb.cse.ucsc.edu/mdb/ Nottingham Arabidopsis Stock Centre's microarray database http://ssbdjc2.nottingham.ac.uk/narrays/experimentbrowse.pl TAIR:Gene Expression Information Resources http://www.arabidopsis.org/links/microarrays.jsp Microarray Informatics Resource Page http://www.ii.uib.no/~inge/micro/ Large-Scale Gene Expression and Microarray Links and Resources http://industry.ebi.ac.uk/~alan/MicroArray/ Listing of DNA microarray links http://www.mpiz-koeln.mpg.de/~weisshaa/Adis/DNA-array-links.html 基因表达谱 Lymphoma/Leukemia Molecular Profiling Project http://llmpp.nih.gov/lymphoma/ Bodymap http://bodymap.ims.u-tokyo.ac.jp/ BodyMap is a data bank of expression information of human and mouse genes, novel or known,in various tissues or cell types ,and various timings Gene Expression Atlas http://expression.gnf.org/cgi-bin/index.cgi 参考资料 http://arep.med.harvard.edu/ http://quantgen.stanford.edu/ KEGG: Kyoto Encyclopedia of Genes and Genomes www.genome.ad.jp/kegg/ SCIENCEPOWER 10－Student Resources （internet） http://www.mcgrawhill.ca/school/booksites/sciencepower+9,+atlantic+edition/student+resources/index.php 2-D PAGE Databases http://proteomics.cancer.dk/ SWISS-2DPAGE http://us.expasy.org/ch2d/ 2-DE Gel Protein Databases at Harefield http://www.harefield.nthames.nhs.uk/nhli/protein/ WORLD-2DPAGE LINKS http://us.expasy.org/ch2d/2d-access.html Mass Spectrometry Links and Resources http://www-rohan.sdsu.edu/staff/ ... lytic/analyt12.html Biology Links http://mcb.harvard.edu/BioLinks.html IMMUNOLOGY WEB SITES http://www.vet.purdue.edu/vpb/immune/websites.htm Cytokine Resources on the Web http://www3.cancer.gov/intra/resource/cytokine.htm Databases available on the Internet http://www.hku.hk/biochem/Docs/database.html （个别失效） Bioinformatics resources http://posnania.biotec.psu.edu/tools/resources.html http://ls.zsu.edu.cn/tools.html Useful Links－databases，web tools (DNA，Protein，Genome，RNA，Other)，& others http://www.tau.ac.il/~gilast/useful_links.htm 核酸tools Tools for sequence alignment Sites for sequence alignment http://www.biocristalografia.df. ... ools/alignment.html SIM4 - a program to align cDNA and genomic DNA http://www.bioinfo.org.cn/relati ... 20genomic%20DNA.htm Bioinformatics Resources－tools http://ls.zsu.edu.cn/tools.html 基因调控 真核生物启动子数据库 http://www.epd.isb-sib.ch/ 真核基因顺式调控元件和反式作用因子数据库TRANSFAC http://transfac.gbf.de/ DBTSS: Database of Transcriptional Start Sites http://dbtss.hgc.jp/samp_home.html Extensive sequence analysis of human transcrpitonal start sites based on DBTSS FirstEF: first-exon and promoter prediction program for human DNA http://rulai.cshl.org/tools/FirstEF/ computational identification of promoters and first exons in the human genome 心脏专题 Cardiac Gene Database How were these Cardiac Genes identified ? See more details on the Cardiac Genes See Cardiac Genes list Some precisions about promotors Related ressources http://igs-server.cnrs-mrs.fr/Card_Gene/ The Human Myocardial Two-Dimensional Electrophoresis Protein Database http://userpage.chemie.fu-berlin.de/~pleiss/dhzb.html The Rat Heart 2-D PAGE database http://www.mpiib-berlin.mpg.de/2D-PAGE/RAT-HEART/2d/ [ Last edited by ratio on 2008-11-30 at 15:52 ] |
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