|
|
ÎÒÒÔ51¸ö¾úÖêµÄ4¸ö»ùÒòÐòÁÐΪ²ÄÁÏ£¬²ÉÓÃseqmatrix½øÐеĶà¸ö»ùÒòµÄÆ´½Ó£¬±È¶ÔÈí¼þÓõÄÔÚÏßµÄMafft£¬½¨Ê÷Èí¼þÓÃPAUP£¬
Åú´¦ÀíÃüÁîÈçÏ£º
begin paup;
[exset * exclude = ;
delete /only; ]
log file=123.txt replace=yes;
pset collapse=minbrlen;
[ctype 1.5_1:all;]
set maxtrees=5000 increase=no;
outgroup CBS560.81;
set criterion=parsimony;
hsearch addseq=random nreps=1000; roottrees outroot=monophyl;
savetrees brlens=yes file=MP.tre replace=yes;
pscores ALL/ci=yes tl=yes hi=yes rc=yes ri=yes khtest=yes;
bootstrap nreps=1000 Keepall=yes / AddSeq=random nreps=10;
roottrees outroot=monophyl;
savetrees file=BT.tre from=1 to=1 savebootp=both maxdec=0 replace=yes;
end;
×îºóµÃµ½µÄÊ÷µÄÎļþ¾megaÈí¼þ²»ÏÔʾµô<50%µÄ²½³¤Öµ£¬½á¹ûΪ¸½¼þtemp.tre£¬
²Î¿¼ÎÄÏ×ÀïÃæµÄÊ÷Ϊ¸½¼þtree in reference.tre,
½á¹ûÓëÎÊÌ⣺
ÎÒ½¨µÄϵͳÊ÷µÄÍØÆË½á¹¹ÓëÎÄÏ×Àï»ù±¾Ò»Ö£¬µ«ÊÇÎÒµÄÊ÷ÐÎÓë²Î¿¼ÎÄÏײî±ðÌ«´ó£¬ÎÒÊÔ¹ýÁËfigtree£¬treeview£¬mega¶¼Ã»°ì·¨½«ÏµÍ³Ê÷ת»¯ÎªÎÄÏ×ÀïµÄÑùʽ¡£²»ÖªÊÇÎÒ×Ô¼ºµÄ½¨Ê÷ÃüÁîÓë²Î¿¼ÎÄÏ×£¨¼ûͼ1£©²î±ðÌ«´ó»¹ÊÇÎÒת»¯²»ÁË¡£
![ѰÕÒÕÒÒ»¸öÔÚ·Ö×ÓÉúÎïѧʵÑé·½ÃæÓоÑéµÄǰ±²]()
ͼ1.png
|
» ±¾Ìû¸½¼þ×ÊÔ´Áбí
-
»¶Ó¼à¶½ºÍ·´À¡£ºÐ¡Ä¾³æ½öÌṩ½»Á÷ƽ̨£¬²»¶Ô¸ÃÄÚÈݸºÔð¡£
±¾ÄÚÈÝÓÉÓû§×ÔÖ÷·¢²¼£¬Èç¹ûÆäÄÚÈÝÉæ¼°µ½ÖªÊ¶²úȨÎÊÌ⣬ÆäÔðÈÎÔÚÓÚÓû§±¾ÈË£¬Èç¶Ô°æÈ¨ÓÐÒìÒ飬ÇëÁªÏµÓÊÏ䣺xiaomuchong@tal.com
- ¸½¼þ 1 : temp.pdf
2016-10-29 12:44:41, 24.62 K
- ¸½¼þ 2 : tree_in_reference.pdf
2016-10-29 12:44:41, 212.61 K
|