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【转载】学校的关于生物学数据库2003年度盘点【已搜索无重复】
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学校同学发的，转过来与学生物的同学共享： http://nar.oupjournals.org/content/vol32/suppl_1/ http://www3.oup.co.uk/nar/database/cap/ Nucleotide Sequence Databases International Nucleotide Sequence Database Collaboration DDBJ in the stream of various biological data EMBL Nucleotide Sequence Database GenBank: update Coding and non-coding DNA ACLAME - A Classification of Mobile genetic Elements AluGene CORG - A database for COmparative Regulatory Genomics CUTG - Codon Usage Tabulated from GenBank FREP Genetic Codes Islander MethDB MICdb - Database of Prokaryotic Microsatellites PACRAT RECODE S/MARt DB STRBase TIGR plant repeat database UniVec UTRdb/UTRsite Vectordb Gene structure, introns and exons, splice sites Ares Lab Yeast Intron Database ASAP ASD - Alternative Splicing Database ASDB - Alternative Splicing Database EASED - Extended Alternatively Spliced EST Database EID - The Exon-Intron Database ExInt HS3D - Homo Sapiens Splice Sites Dataset IDB/IEDB Intronerator SpliceDB SpliceNest Xpro YIDB Transcriptional regulator sites and transcription factors ACTIVITY ASPD DBTBS DBTSS DPInteract EPD GeneNet JASPAR ooTFD PLACE PlantCARE PlantProm PRODORIC PromEC RegulonDB rSNP Guide SCPD - Saccharomyces cerevisiae promoter database SELEXdb TESS TRANSCompel?? TRANSFAC?? TRANSPATH?? Transterm TRRD TrSDB RNA sequence databases 16S and 23S Ribosomal RNA Mutation Database 5S Ribosomal RNA Database Aptamer Database ARED CORG - A database for COmparative Regulatory Genomics European rRNA database GtRDB - Genomic tRNA Database Guide RNA Database HIV Sequence Database HyPaLib Intronerator IRESdb - the Internal Ribosome Entry Site database microRNA Registry Mobile group II introns database NCIR - Non-Canonical Interactions in RNA Noncoding regulatory RNAs database Plant snoRNA DB PLANTncRNAs PLMItRNA PseudoBase Rfam Ribosomal Database Project (RDP-II) Ribosomal Internal Spacer Sequence Collection RNA Modification Database SELEXdb Small RNA Database SRPDB Subviral RNA Database The tmRNA Website tmRDB tRNA Sequences UTRdb/UTRsite Yeast snoRNA Database Protein sequence databases General sequence databases EXProt Munich Information Center for Protein Sequences (MIPS) NCBI Protein database PIR - Protein Information Resource PIR-NREF PRF SWISS-PROT TrEMBL UniProt - The Universal Protein Knowledgebase Protein properties AAindex JenPep ProTherm Protein localization and targeting DBSubLoc - Database of protein Subcellular Localization MitoDrome MitoNuc NESbase 1.0 NLSdb NPD - Nuclear Protein Database Nuclear Receptor Resource NUREBASE OGRe - Organellar Genome Resource THGS - Transmembrane Helices in Genome Sequences TMPDB - Transmembrane Protein Database Protein sequence motifs and active sites ASC - Active Sequence Collection Blocks COMe - Co-Ordination of Metals etc. CSA - Catalytic Site Atlas eF-site - Electrostatic surface of Functional site eMOTIF InterPro Metalloprotein Database and Browser O-GLYCBASE PhosphoBase PRINTS PROMISE PROSITE Protein domain databases; protein classification BAliBASE CDD CluSTr - Clusters of Swiss-Prot and TrEMBL proteins COG - Clusters of Orthologous Groups of proteins DomIns - Database of Domain Insertions FusionDB Hits HSSP InterDom InterPro iProClass MetaFam PALI Pfam PIR-ALN PIRSF ProClass ProDom ProtoMap ProtoNet SBASE SMART SUPFAM TIGRFAMs Databases of individual protein families AARSDB ABCdb ARAMEMNON BacTregulators (formerly AraC/XylS database) CSDBase - Cold Shock Domain database DExH/D Family Database Endogenous GPCR List ESTHER FUNPEP GPCRDB Histone Database HIV RT and Protease Sequence Database Homeobox Page Homeodomain Resource InBase KinG - Kinases in Genomes Knottins LGICdb Lipase Engineering Database LOX-DB MEROPS Nuclear Receptor Resource NucleaRDB NUREBASE Olfactory Receptor Database Peptaibol PHYTOPROT PKR PLANT-PIs PlantsP/PlantsT Prolysis REBASE Ribonuclease P Database RPG - Ribosomal Protein Gene database RTKdb - Receptor Tyrosine Kinase database SDAP SENTRA SEVENS SRPDB TransportDB VKCDB - Voltage-gated K+ Channel Database Wnt Database Structure Databases Small molecules AANT - Amino Acid - Nucleotide interaction database CSD - Cambridge Structural Database Het-PDB Navi HIC-Up Klotho LIGAND Carbohydrates CCSD - Complex Carbohydrate Structure Database (CarbBank) Glycan GlycoSuiteDB Monosaccharide Browser SWEET-DB Nucleic acid structure NCIR - Non-Canonical Interactions in RNA NDB NTDB Rfam RNABase SCOR - Structural Classification Of RNA Protein structure 3D-Genomics ArchDB ASTRAL BioImage BioMagResBank CADB - Conformational Angles DataBase of Proteins CATH CE CKAAPs DB - Conserved Key Amino Acid Positions Database CSA - Catalytic Site Atlas Dali database Decoys 'R' Us DisProt - Database of Protein Disorder DomIns - Database of Domain Insertions DSDBASE - Disulfide Database DSMM - a Database of Simulated Molecular Motions E-MSD - EBI-Macromolecular Structure Database eF-site - Electrostatic surface of Functional site FSSP Gene3D Genomic Threading Database GTOP - Genomes To Protein structures HOMSTRAD - Homologous Structure Alignment Database IMB Jena Image Library IMGT/3Dstructure-DB ISSD LPFC MHC-Peptide Interaction Database MMDB ModBase MolMovDB - Database of Macromolecular Movements PASS2 PDB PDB-REPRDB PDBsum PepConfDB PRESAGE RESID SCOP - Structural Classification Of Proteins SLoop SSToSS - Sequence-Structural Templates of Single-member Superfamilies Structure-Superposition Database SUPERFAMILY SURFACE SWISS-MODEL Repository TOPS - Topology Of Protein Structures Genomics Databases (non-vertebrate) Genome annotation terms, ontologies and nomenclature DBcat Genew: The Human Gene Nomenclature Database GO - Gene Ontology GOA - Gene Ontology Annotation IUBMB Nomenclature database IUPAC Nomenclature database IUPHAR-RD PANTHER SOURCE UMLS - Unified Medical Language System Taxonomy and identification ICB MICdb - Database of Prokaryotic Microsatellites NCBI Taxonomy Browser Ribosomal Database Project (RDP-II) Ribosomal Internal Spacer Sequence Collection RIDOM - Ribosomal Differentiation of Medical Microorganisms Tree of Life General genomics databases COG - Clusters of Orthologous Groups of proteins DEG - Database of Essential Genes EBI Genomes Entrez Genomes ERGO-Light GeneNest Genome information broker GOLD GtRDB - Genomic tRNA Database Kyoto Encyclopedia of Genes and Genomes (KEGG) MBGD MetaCyc ORFanage PEDANT genome database PEP: Predictions for Entire Proteomes STRING The TIGR Plant Repeat Databases: a collective resource for the identific atio n of repetitive sequences in plants TIGR Comprehensive Microbial Resource TIGR Microbial Database TransportDB WIT2 Viral genome databases HCV Sequence Database HCVDB - Hepatitis C Virus Database HERVd - Human Endogenous Retrovirus database HIV Drug Resistance Database HIV Molecular Immunology Database HIV RT and Protease Sequence Database HIV Sequence Database HIV-RT Subviral RNA Database VIDA VirGen Prokaryotic genome databases ASAP - A Systematic Annotation Package BSORF - Bacillus subtilis Open Reading Frames CampyDB - Campylobacter Database CCDB - CyberCell Database ClostriDB - Clostridium Database coliBase Colibri CyanoBase DBTBS DPInteract EcoCyc EcoGene EMGlib - Enhanced Microbial Genomes Library Essential genes in E. coli FusionDB GenoBase HGT-DB, Horizontal Gene Transfer-DataBase Islander LeptoList MolliGen NRSub PEC - Profiling of E. coli Chromosome PromEC RegulonDB RRNDB RsGDB SubtiList Unicellular eukaryotes genome databases ApiEST-DB - Apicomplexan EST Database Ares Lab Yeast Intron Database CryptoDB - Cryptosporidium database CYGD - Comprehensive Yeast Genome Database DictyBase Full-Malaria GeneDB G閚olevures GermOnline MitoPD PlasmoDB SCMD - Saccharomyces cerevisiae Morphological Database SCPD - Saccharomyces cerevisiae promoter database SGD - Saccharomyces Genome Database TcruziDB ToxoDB TRIPLES YDPM - Yeast Deletion Project Yeast snoRNA Database YIDB yMGV - Yeast microarray global viewer Plant genome databases ARAMEMNON AtGDB BGI-RISe - Beijing Genomics Institute Rice Information System CATMA - Complete Arabidopsis Transcriptome MicroArray CropNet FLAGdb/FST G閚oPlante-Info GenProtEC GOBASE GrainGenes INE IRIS - International Rice Information System MaizeGDB MAtDB Medicago Genome Initiative (MGI) Mendel Database MOsDB MPIMP - Mitochondrial Protein Import Machinery of Plants MtDB - Medicago trunculata Database NASCarrays Oryzabase PHYTOPROT PLACE Plant Genome Central Plant snoRNA DB PLANT-PIs PlantCARE PlantGDB PLANTncRNAs PlantProm PlantsP/PlantsT PLMItRNA PPMdb Rice Pipeline RiceGAAS RPD - Rice Proteome Database SeedGenes Sputnik The Arabidopsis Information Resource (TAIR) TIGR plant repeat database TropGENE DB ZmDB Fungal genome databases CADRE - Central Aspergillus Data Repository COGEME Phytopathogenic Fungi and Oomycete EST Database MagnaportheDB MNCDB The Phytophthora Genome Consortium Database Invertebrate genome databases ACeDB AppaDB C. elegans Project CnidBase Drosophila microarray centre FlyBase FlyTrap FlyView GadFly Homophila InterActive Fly Intronerator MitoDrome Nematode.net NEMBASE RNAiDB WILMA WorfDB - Worm ORF Database WormBase Metabolic and Signaling Pathways Enzymes and enzyme nomenclature BRENDA ENZYME Enzyme Nomenclature IntEnz Metabolic pathways BioCarta BioCyc BRITE - Biomolecular Relations in Information Transmission and Expressio n BSD - Biodegradative Strain Database Klotho Kyoto Encyclopedia of Genes and Genomes (KEGG) LIGAND MetaCyc PathDB UM-BBD WIT2 Intermolecular interactions and signaling pathways aMAZE BIND - Biomolecular Interaction Network Database BioCarta DIP - Database of Interacting Proteins DRC - Database of Ribosomal Crosslinks GeneNet Het-PDB Navi IntAct project InterDom MHC-Peptide Interaction Database MHCPEP PKR PRODORIC ROSPath SENTRA SMART STCDB - Signal Transduction Classification Database TRANSPATH?? Human and other Vertebrate Genomes Mitochondrial genes and proteins AMmtDB GOBASE HvrBase MitoDat MitoDrome MITOMAP MitoNuc MITOP2 MitoPD MitoProteome MPIMP - Mitochondrial Protein Import Machinery of Plants OGRe - Organellar Genome Resource Model organisms, comparative genomics ACeDB AllGenes ArkDB BodyMap CORG - A database for COmparative Regulatory Genomics Cre Transgenic Database EGO - Eukaryotic Gene Orthologs Ensembl euGenes FREP GeneNest Genetpig GXD - Mouse Gene Expression Database Homophila KOG - Eukaryotic Orthologous Groups of proteins Mouse Atlas and Gene Expression Database Mouse Genome Database Mouse SAGE Mouse Targeted Mutations MTB - Mouse Tumor Biology Database MTID - Mouse Transposon Insertion Database OMIA - Online Mendelian Inheritance in Animals ParaDB PathBase PEDE - Pig EST Data Explorer Rat Genome Database RefSeq RTCGD - Retroviral Tagged Cancer Gene Database Xpro ZFIN Human genome databases, maps and viewers AluGene CroW 21 Ensembl G3-RH GB4-RH GDB Gene Resource Locator GeneAnnot GeneCards GeneLoc GenMapDB HOWDY HuGeMap Human BAC Ends Database IXDB RHdb UCSC Genome Browser UniSTS Human ORFs ASDB - Alternative Splicing Database DRESH FANTOM GeneAnnot HPRD - Human Protein Reference Database HS3D - Homo Sapiens Splice Sites Dataset HUGE - Human Unidentified Gene-Encoded large proteins HUNT IMGT/LIGM-DB LIFEdb NetAffx ORFDB RefSeq STACK SYSTERS, GeneNest, SpliceNest The TIGR Plant Repeat Databases: a collective resource for the identific atio n of repetitive sequences in plants trome, trEST and trGEN UniGene Human Genes and Diseases General human genetics databases FIMM GenAtlas GeneCards Genetics Home Reference Genew: The Human Gene Nomenclature Database HERVd - Human Endogenous Retrovirus database HGMD?? - Human Gene Mutation Database IMGT Kabat Database OMIM - Online Mendelian Inheritance in Man General polymorphism databases ALFRED Cytokine Gene Polymorphism Database dbSNP HGMD?? - Human Gene Mutation Database HGVbase HGVS Databases IPD - Immuno Polymorphism Database JSNP Mutation Spectra Database OMIM - Online Mendelian Inheritance in Man PMD rSNP Guide The SNP Consortium database TopoSNP Cancer gene databases Atlas of Genetics and Cytogenetics in Oncology and Haematology CGED - Cancer Gene Expression Database Database of Germline p53 Mutations Human p53, human hprt, rodent lacI and rodent lacZ databases IARC TP53 Database MTB - Mouse Tumor Biology Database Oral Cancer Gene Database RTCGD - Retroviral Tagged Cancer Gene Database SNP500Cancer SV40 Large T-Antigen Mutant Database Tumor Gene Family Databases (TGDBs) Gene-, system- or disease-specific databases Androgen Receptor Gene Mutations Database AngioDB Atlas of Genetics and Cytogenetics in Oncology and Haematology BayGenomics BGED - Brain Gene Expression Database BTKbase CASRDB Cytokine Gene Polymorphism Database Cytokine Gene Polymorphism in Human Disease EICO DB - Expression-based Imprint Candidate Organiser EpoDB - Erythropoiesis Database ERGDB - Estrogen Responsive Genes Database EyeSite FUNPEP GOLD.db - Genomics Of Lipid-associated Disorders GRAP Mutant Databases HaemB HbVar HemBase HemoPDB - Hematopoietic Promoter Database HORDE - Human Olfactory Receptor Data Exploratorium HOX-PRO HPMR - Human Plasma Membrane Receptome Human PAX2 Allelic Variant Database Human PAX6 Allelic Variant Database Human Type I and Type III Collagen Mutation Database IL2Rgbase IMGT/GENE-DB IMGT/HLA Imprinted Genes and Parent-of-Origin Effects INFEVERS KinMutBase KMDB Lowe Syndrome Mutation Database NCL Mutation Database PAHdb PEDB PGDB PHEXdb PTCH1 Mutation Database RB1 Gene Mutation Database Microarray Data and other Gene Expression Databases ArrayExpress Axeldb BGED - Brain Gene Expression Database BodyMap CATMA - Complete Arabidopsis Transcriptome MicroArray CGED - Cancer Gene Expression Database CleanEx Drosophila microarray centre emap Atlas - Edinburgh Mouse Atlas EPConDB EpoDB - Erythropoiesis Database GeneNote GenePaint GeneTrap GermOnline GXD - Mouse Gene Expression Database HemBase HemoPDB - Hematopoietic Promoter Database HPMR - Human Plasma Membrane Receptome HugeIndex - Human Gene Expression Index Interferon Stimulated Gene Database Kidney Development Database MAGEST MEPD: A Medaka gene expression pattern database Mouse Atlas and Gene Expression Database Mouse SAGE NASCarrays NetAffx PEDB PEPR - Public Expression Profiling Resource PPMdb RefExA SOURCE STACK Stanford Microarray Database Tooth Development Database TRANSFAC?? TRIPLES yMGV - Yeast microarray global viewer Proteomics Resources AAindex GELBANK PAD - Proteome Analysis Database PEP: Predictions for Entire Proteomes RESID SWISS-2DPAGE Other Molecular Biology Databases PubMed Drugs and drug design ANTIMIC APD - Antimicrobial Peptide Database BSD - Biodegradative Strain Database DART - Drug Adverse Reaction Targets HIV Drug Resistance Database HIV Molecular Immunology Database IUPHAR-RD Peptaibol PharmGKB - The Pharmacogenomics and Pharmacogenetics Knowledge Base TTD - Therapeutic Target Database Molecular probes and primers IMGT/PRIMER-DB MPDB - Molecular Probe Database probeBase RTPrimerDB VirOligo [ Last edited by ratio on 2008-11-20 at 21:54 ] |
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