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A total of 2 ¦Ìg of aRNA from the tumor biopsies and 25 ¦Ìg of pooled normal total RNA from matched normal samples were reverse transcribed using Superscript II (Invitrogen) and random primers (Invitrogen) for biopsy samples or oligo- d(T)20VN (Invitrogen) for pooled normal specimens in the presence of Cy5-dCTP or Cy3-dCTP (PerkinElmer Life and Analytical Sciences). Following direct labeling, the two cDNA probes were purified using a PCR Purification Kit (Qiagen) and hybridized for 20 hours at 50¡ðC to a microarray slide. The slides were washed, dried, and scanned at 532nm and 635nm using a Scan Array Lite (PerkinElmer Life and Analytical Sciences, Boston, MA). |
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