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【原创】在Fedora下安装Materials Studio 4.3已有3人参与
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系统环境:Fedora 12 i386 chs,运行于VMWare 7下。 直接安装Materials Studio 4.3会确定无疑的提示如下(比如只选择3号,也就是CASTEP安装。): Checking for dependencies for CASTEPServer:7 Checking for dependencies for CASTEP: None Checking for dependencies for Licensing:1 Checking for dependencies for LicensePack: None Aborting Materials Studio installation. 然后看到当前用户目录下,只有个空荡荡的Accelrys的文件夹。 其实,上面那些依赖信息和数字,并不是失败的根源,有兴趣的同学可以参考一下安装盘中/UNIX/installer/Linux/default下三个配置文件就明白了。 具体发现如何修改的过程就不说了,其实在T2050的破CPU的老本本下跑VM还是很痛苦的,并且Materials Studio也是个大软件,为了查找发生错误的根源,从最基本的install.log(写个脚本在删除前拷贝出)开始入手,一点点的翻阅可能有关的所有安装用脚本、配置文件和安装包,折腾了三个小时才搞定。幸好自己有不少写C/C++玩的经验,否则这么多代码,估计得看到明天早晨了。 直接入正题了。 做两处修改,第一个,/UNIX/Installer/lib/InstallTools.pm中,有个子函数GetOSVersion。其中校验了两个系统。把出现的四个redhat-release都修改为fedora-release。 第二个,/UNIX/Installer/lib/LicensePack.pm中,有一段是安装证书包的,问题出在if的检验上。原来的代码: if ( system( "$SourcePath/installer/call_lp_setup.csh $extraarg $MSInstallRoot $msi_lic_pack_dir $LicSource $SourcePath/installer" ) != 0 ) 直接在终端测试,无法运行call_lp_setup.csh,所以结果肯定是非零,根据判断非零所需要调用的代码,大家很痛心疾首的: print "Aborting Materials Studio installation.\n"; system("rm -rf $MSInstallRoot" ;于是,直接更新了csh脚本执行命令,然后为了防止系统默认并不是执行的csh而是其他脚本命令,直接在代码强制执行csh,所以这段代码就成为了: if ( system( "csh $SourcePath/installer/call_lp_setup.csh $extraarg $MSInstallRoot $msi_lic_pack_dir $LicSource $SourcePath/installer" ) != 0 ) 于是再进行安装,一切顺利。 顺便后悔一下安装了Linux Security,居然把我的Gataway给拦截了。以前还拦截了Adobe Reader,崩溃。 另外,由于Ubuntu是基于Debian的,使用的包的类型与Red Hat和SUSE都不太相同,想要做修改安装的同学,要再多加点油了。至少现在,Fedora和CentOS应该是都没有问题的了。 当然了,前提是先需要把安装文件从ISO中拷贝到硬盘上,否则是无法修改后保存的。 修改后的安装过程入下(终端过程,由于VM中划分的硬盘空间比较小,所以只安装了CASTEP作为例子,其他的也都没有问题): |
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cic08@cic08:~/UNIX$ ./Install --type cluster Running Materials Studio installer for platform Linux_x86_64... Please specify an absolute destination path [/home/cic08/Accelrys/MaterialsStudio50] : Please choose the packages you wish to install: 1. AmorphousCell Server 2. Blends Server 3. CASTEP Server 4. CCDC Servers (ConQuest, Motif) 5. Conformers Server 6. DFTB+ Server 7. DMol3 Server 8. DPD Server 9. Discover Server 10. Equilibria Server 11. Forcite Server 12. GULP Server 13. Gaussian Server 14. Kinetix Server 15. MesoDyn Server 16. Mesocite Server 17. Mesotek Server 18. Morphology Server 19. ONETEP Server 20. Polymorph Server 21. QMERA Server 22. QSAR Models Server 23. Reflex+ Server 24. Reflex QPA Server 25. Reflex Server 26. Sorption Server 27. Structures Library 28. VAMP Server 29. Everything Enter items to install (e.g. 1,2,5) , or Q to quit : 29 Starting installation... Install log in /home/cic08/Accelrys/MaterialsStudio50/install.log Installing everything... Checking for dependencies for AmorphousCellServer:6 Checking for dependencies for AmorphousCell: None Checking for dependencies for Licensing:1 Checking for dependencies for LicensePack: None Initializing InstallShield Wizard........ Launching InstallShield Wizard........ ------------------------------------------------------------------------------- Accelrys License Pack 7.6.2 - InstallShield Wizard Welcome to the InstallShield Wizard for Accelrys License Pack 7.6.2 The InstallShield Wizard will install Accelrys License Pack 7.6.2 on your computer. To continue, choose Next. Accelrys License Pack 7.6.2 Accelrys Software Inc. http://www.accelrys.com Press 1 for Next, 3 to Cancel or 5 to Redisplay [1] ------------------------------------------------------------------------------- Accelrys License Pack 7.6.2 - InstallShield Wizard Accelrys License Pack 7.6.2 Install Location Please specify a directory or press Enter to accept the default directory. Destination Directory [/home/cic08/Accelrys] Press 1 for Next, 2 for Previous, 3 to Cancel or 5 to Redisplay [1] ------------------------------------------------------------------------------- Accelrys License Pack 7.6.2 - InstallShield Wizard Select the features for "Accelrys License Pack 7.6.2" you would like to install: Accelrys License Pack 7.6.2 To select/deselect a feature or to view its children, type its number: 1. [x] LicensePack 2. [ ] Compatibility LicensePack The Compatibility LicensePack is required for supporting Accelrys software shipped with License Packs 6.x or lower and to support IRIX and Solaris platforms. See License Pack documentation for complete list of Accelrys software supported by this License Pack. Other options: 0. Continue installing Enter command [0] 2 Select the features for "Accelrys License Pack 7.6.2" you would like to install: Accelrys License Pack 7.6.2 To select/deselect a feature or to view its children, type its number: 1. [x] LicensePack 2. [x] Compatibility LicensePack The Compatibility LicensePack is required for supporting Accelrys software shipped with License Packs 6.x or lower and to support IRIX and Solaris platforms. See License Pack documentation for complete list of Accelrys software supported by this License Pack. Other options: 0. Continue installing Enter command [0] Press 1 for Next, 2 for Previous, 3 to Cancel or 5 to Redisplay [1] ------------------------------------------------------------------------------- Accelrys License Pack 7.6.2 - InstallShield Wizard Accelrys License Pack 7.6.2 will be installed in the following location: /home/cic08/Accelrys/LicensePack with the following features: LicensePack Compatibility LicensePack for a total size: 256.1 MB Press 1 for Next, 2 for Previous, 3 to Cancel or 5 to Redisplay [1] ------------------------------------------------------------------------------- Accelrys License Pack 7.6.2 - InstallShield Wizard Installing Accelrys License Pack 7.6.2. Please wait... |-----------|-----------|-----------|------------| 0% 25% 50% 75% 100% |||||||||||||||||||||||||||||||||||||||||||||||||| Creating uninstaller... Finalizing the Vital Product Data Registry. Please wait... Configuring License Pack ------------------------------------------------------------------------------- Accelrys License Pack 7.6.2 - InstallShield Wizard The InstallShield Wizard has successfully installed Accelrys License Pack 7.6.2. Choose Finish to exit the wizard. Press 3 to Finish or 5 to Redisplay [3] Checking for dependencies for SharedSetup:4 Checking for dependencies for IntelRuntime: None Checking for dependencies for HPMPI:1 Do HP-MPI Installation -- cluster install requested. Please remember that HP-MPI must be installed on each node of the cluster. Do you still want to continue the installation? [Y/n]: Should HPMPI use SSH? [Y/n]: Configuring HP-MPI installation Setting up machines.LINUX file in /home/cic08/Accelrys/MaterialsStudio50/share/data Checking for dependencies for GatewayTmp: None Please specify the location for temporary files (required for certain computational servers), e.g., /tmp or /usr/tmp. Enter ./tmp if you prefer to create these files in the directory where the job is being run. Please note that the ./tmp setting could create additional I/O overhead and thereby affect performance [/tmp] : Checking for dependencies for GatewayScripts: None Configuring environment setup Setting installation path in environment setup script files Checking for dependencies for Gateway:4 Checking for dependencies for perl: None Checking for dependencies for apache: None Configuring Gateway to use default port Configuring Gateway for cluster access ../../bin/perl: 4: [: ../..: unexpected operator Configuring Gateway for supported queueing systems ../../bin/perl: 4: [: ../..: unexpected operator Checking for dependencies for PPComponents: None Checking for dependencies for Discover: None Creating Stand alone AmorphousCell script /home/cic08/Accelrys/MaterialsStudio50/etc/AmorphousCell/bin/RunAmorphousCell.sh Checking for dependencies for CASTEPServer:4 Checking for dependencies for CASTEP: None Checking for dependencies for MatServer:34 Checking for dependencies for MKL:1 Checking for dependencies for boost: None Checking for dependencies for xpcom: None Checking for dependencies for xpidl: None Checking for dependencies for WinCE: None Checking for dependencies for MS3rdParty: None Checking for dependencies for ApplicationComponents: None Checking for dependencies for ApplicationLibraries: None Checking for dependencies for Container: None Checking for dependencies for ContainerInterfaces: None Checking for dependencies for ContainerRootConsumer: None Checking for dependencies for ContainerUtils: None Checking for dependencies for DataModel: None Checking for dependencies for Documents: None Checking for dependencies for DocumentsInterfaces: None Checking for dependencies for Libraries: None Checking for dependencies for SDK: None Checking for dependencies for Services: None Checking for dependencies for ServicesInterfaces: None Checking for dependencies for Scripting: None Checking for dependencies for Simulations: None Checking for dependencies for ViewersInterfaces: None Checking for dependencies for Visualizer: None Checking for dependencies for VisualizerInterfaces: None Checking for dependencies for QSAR: None Checking for dependencies for QSARApplications: None Checking for dependencies for Polymer: None Checking for dependencies for MSExampleData: None Creating Stand alone MatServer script /home/cic08/Accelrys/MaterialsStudio50/etc/MatServer/bin/RunMatServer.sh Checking for dependencies for Quantum: None Creating Stand alone CASTEP script /home/cic08/Accelrys/MaterialsStudio50/etc/CASTEP/bin/RunCASTEP.sh Checking for dependencies for DMol3Server:4 Checking for dependencies for DMol3: None Creating Stand alone DMol3 script /home/cic08/Accelrys/MaterialsStudio50/etc/DMol3/bin/RunDMol3.sh Checking for dependencies for DPDServer:7 Checking for dependencies for DPD: None Creating Stand alone DPD script /home/cic08/Accelrys/MaterialsStudio50/etc/DPD/bin/RunDPD.sh Checking for dependencies for DiscoverServer:6 Creating Stand alone Discover script /home/cic08/Accelrys/MaterialsStudio50/etc/Discover/bin/RunDiscover.sh Checking for dependencies for EquilibriaServer:7 Checking for dependencies for Equilibria: None Creating Stand alone Equilibria script /home/cic08/Accelrys/MaterialsStudio50/etc/Equilibria/bin/RunEquilibria.sh Checking for dependencies for GaussianServer:5 Checking for dependencies for Gaussian: None You have chosen to install the Gaussian server but Gaussian seems not to be installed on this machine. Before using the Gaussian server please make sure that Gaussian is installed. Press ENTER to continue: Checking for dependencies for MesoDynServer:6 Checking for dependencies for MesoDyn: None Creating Stand alone MesoDyn script /home/cic08/Accelrys/MaterialsStudio50/etc/MesoDyn/bin/RunMesoDyn.sh Checking for dependencies for ReflexPlusServer:6 Checking for dependencies for Analytical: None Checking for dependencies for ReflexServer:5 Checking for dependencies for PowderIndexing: None Checking for dependencies for Structures:1 Checking for dependencies for MSStructures: None Checking for dependencies for VAMPServer:6 Checking for dependencies for VAMP: None Creating Stand alone VAMP script /home/cic08/Accelrys/MaterialsStudio50/etc/VAMP/bin/RunVAMP.sh Checking for dependencies for QMERAServer:7 Checking for dependencies for QMERA: None Checking for dependencies for GULP: None Creating Stand alone QMERA script /home/cic08/Accelrys/MaterialsStudio50/etc/QMERA/bin/RunQMERA.sh Checking for dependencies for GULPServer:6 Creating Stand alone GULP script /home/cic08/Accelrys/MaterialsStudio50/etc/GULP/bin/RunGULP.sh Checking for dependencies for ONETEPServer:6 Checking for dependencies for ONETEP: None Creating Stand alone ONETEP script /home/cic08/Accelrys/MaterialsStudio50/etc/ONETEP/bin/RunONETEP.sh Checking for dependencies for MesotekServer:6 Checking for dependencies for Mesotek: None Creating Stand alone Mesotek script /home/cic08/Accelrys/MaterialsStudio50/etc/Mesotek/bin/RunMesotek.sh Checking for dependencies for KinetixServer:5 Checking for dependencies for Kinetix: None Creating Stand alone Kinetix script /home/cic08/Accelrys/MaterialsStudio50/etc/Kinetix/bin/RunKinetix.sh Checking for dependencies for BlendsServer:2 Checking for dependencies for Docking: None Checking for dependencies for ConformerSearchServer:2 Checking for dependencies for DFTBServer:4 Checking for dependencies for DFTB: None Checking for dependencies for Nano: None Creating Stand alone DFTB script /home/cic08/Accelrys/MaterialsStudio50/etc/DFTB/bin/RunDFTB.sh Checking for dependencies for ForciteServer:2 Checking for dependencies for MesociteServer:3 Checking for dependencies for Meso: None Checking for dependencies for MorphologyServer:2 Checking for dependencies for Crystallization: None Checking for dependencies for PolymorphServer:2 Checking for dependencies for QSARModelsServer:2 Checking for dependencies for FastDesc: None Checking for dependencies for ReflexQPAServer:2 Checking for dependencies for SorptionServer:2 Checking for dependencies for CCDCServers:3 Checking for dependencies for CCDC: None You have chosen to install the CCDC servers, but neither ConQuest nor Motif appear to be installed. Please make sure that these servers are present before attempting to use them. Press ENTER to continue: Checking for dependencies for QSARInterfaces: None If you would like the Gateway at /home/cic08/Accelrys/MaterialsStudio50/etc to be started automatically when the system is restarted you will need to get your administrator to place a copy of /home/cic08/Accelrys/MaterialsStudio50/etc/Gateway/msgateway_control_18889 in /etc/rc.d/init.d/msgateway_control_18889 and run: /sbin/chkconfig --add msgateway_control_18889 Please refer to the installation instructions for more details. A Materials Studio Gateway provides access to server components installed on your machine. By default the Gateway is configured to use minimum security. You can use the Gateway configuration tools after installation to enforce higher levels of security. The servers in this installation will not be available from the Materials Studio visualizer until the Gateway has been started. If you choose not to start the Gateway now you will need to start it manually after this installation has completed. Please refer to the help text on the CD for instructions on how to start, stop, and customize your Gateway configuration. Would you like to start the Gateway service now? [Y/n]: Starting gateway... ../../bin/perl: 4: [: ../..: unexpected operator Registering XPCom components; this may take a while... System configuration details for HP-MPI These checks assume that the default user authentication mechanism is being used. Your System Administrator may have chosen to use an alternative mechanism. If you find that parallel jobs fail you should consult your System Administrator and ask them to perform appropriate configuration work. For further details please refer your System Administrator to the installation documentation under the info folder on your installation CD Checking remote shell settings for MPI The HP-MPI installation included as part of this Materials Studio installation requires that openssh is installed and enabled. openssh is not installed Please ask your systems administrator to install openssh. Parallel execution of Materials Studio servers will fail if openssh is not installed. 1) Enter temporary license password 2) Set connection to license server 3) List command line license administration tools 99) Finished with license configuration Choose one of the above options: 99 Exiting program Press ENTER to continue: 楼主,这是我的MS5.0在Ubuntu 12.04.1 上的安装步骤,在这个之前现在root下安装了MPI包,没有啥问题,最后也在 ~/Accelrys/MaterialsStudio50/etc/Gateway/root_default/dsd/conf的两个文件gw-info.sbd gwparams.cfg里更改了 gw_mpi=yes gw_mpicommand=/opt/hpmpi/bin/mpirun -e MPI_REMSH=/usr/bin/ssh -TCP -prot -f APPFILE gw_mpiversion=2.03.01.00 然后重新启动了GATEWAY,但是只能提交不并行的任务,仍然不能并行,因为我看到安装最后有这样一段话 The HP-MPI installation included as part of this Materials Studio installation requires that openssh is installed and enabled. openssh is not installed Please ask your systems administrator to install openssh. Parallel execution of Materials Studio servers will fail if openssh is not installed. 你说是不是,openssh的问题哦,但是这个我是安装的啊, 我看你的帖子说要修改ssh的环境变量,是不是因为这个原因,所以我安装了ssh,由于环境变量没有设对,导致不能并行的哦 |
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