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shuangyang

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[½»Á÷] ¡¾ÇóÖú¡¿¼±£¡£¡£¡Çë½Ì¸ßÊÖ¿´Ò»ÏÂperl³ÌÐòÀïµÄÑ­»·ÎÊÌ⣿

Ϊʲômy $scafmatch =$allterm[7] - $allterm[6]²»Ñ­»·£¿Ö®Ç°µÄ³ÌÐò²âÊÔ¶¼¶Ô£¡¼±°¡£¡£¡Ð»Ð»£¡
#!/usr/bin/perl -w
  2 use strict;
  3 unless (@ARGV == 3) {
  4     die "please check your input files and output files";
  5 }
  6 open IN,$ARGV[0] or die "$!\n";
  7 open FILE,$ARGV[1] or die "$!\n";
  8 open OUT,">$ARGV[2]" or die "$!\n";
  9 our @array;
10 $/ = ">";
11 ;
12 while( {
13     chomp;
14     my @all = split /\n/,$_;
15     my $name = shift(@all);
16     my @term = split /\s+/,$name;
17     my $scafname = shift (@term);
18     my $scaf = join "",@all;
19     my @base = split //,$scaf;
20     my $num = 0;
21     for my $i(@base) {
22         if ($i =~/[ATGCN]/) {
23                 $num++;
24         }
25     }
26 #    print OUT $scafname,"\t",$num,"\n";
27     my  @quary = ($scafname,$num);
28     push @array,[@quary];
29 }
30 close IN;
31 LABLE: while ( {
32        chomp;
33        my @allterm = split /\s+/,$_;
34        my $a = "";
35        my $rate = 0;
36        next LABLE if ($a eq $allterm[0]);
37        my $scafmatch = $allterm[7] - $allterm[6];
38        for my $i(0 ..$#array) {
39         if ($array[$i][0] eq $allterm[0] ) {
40              $rate = ( $scafmatch / $array[$i][1]);
41         }
42        print OUT $array[$i][0],"\t",$array[$i][1],"\t","the rate 0f match:\t",$rate,"\n";
43        $a = $allterm[0];
        }
45   }
46 close FILE;
47 close OUT;

[ Last edited by nono2009 on 2010-8-19 at 07:07 ]
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shuangyang(½ð±Ò+2): 2010-08-19 09:09:48
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