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[交流]
【求助】linux下MS提交任务一直不成功
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我是在学校高性能计算中心服务器上装的MS4.4，服务器上安装的是LSF queues，我直接在输入文件里用bsub命令busb -a intelmpi -n 40 mpirun.lsf ./castep.exe. 提交的，任务状态一直是PEND，output文件显示没找到这样的文件或路径，换成castepexe_mpi.exe也不行。是不是要在脚本里重新设置变量路径吗？ 必须要写脚本文件吗？ 下面是output文件： /gpfssan1/home/jszhu/.lsbatch/1268838221.1616: line 8: mpirun.lsf./castep.exe: No such file or directory ------------------------------------------------------------ Sender: LSF System Subject: Job 1616: Job Job was executed on host(s) <8*c20n05>, in queue <8*c19n03> <4*c15n12> was used as the home directory. was used as the working directory. Started at Wed Mar 17 23:03:43 2010 Results reported at Wed Mar 17 23:03:44 2010 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input mpirun.lsf./castep.exe ------------------------------------------------------------ Exited with exit code 127. Resource usage summary: CPU time : 0.10 sec. Max Memory : 3 MB Max Swap : 29 MB Max Processes : 1 Max Threads : 1 The output (if any) is above this job summary. 用sh提交： bsub -a intelmpi -n 40 mpirun.lsf ./RunCASTEP.shoutput显示如下 Mar 19 18:16:37 2010 4055 3 7.04 TS: execvp(./RunCASTEP.sh) failed. No such file or directory Mar 19 18:16:37 2010 4056 3 7.04 TS: execvp(./RunCASTEP.sh) failed. No such file or directory Mar 19 18:16:37 2010 4057 3 7.04 TS: execvp(./RunCASTEP.sh) failed. No such file or directory Mar 19 18:16:37 2010 4059 3 7.04 TS: execvp(./RunCASTEP.sh) failed. No such file or directory Mar 19 18:16:37 2010 4060 3 7.04 TS: execvp(./RunCASTEP.sh) failed. No such file or directory Mar 19 18:16:37 2010 4061 3 7.04 TS: execvp(./RunCASTEP.sh) failed. No such file or directory Mar 19 18:16:37 2010 2619 3 7.04 TS: execvp(./RunCASTEP.sh) failed. No such file or directory Mar 19 18:16:37 2010 2622 3 7.04 TS: execvp(./RunCASTEP.sh) failed. No such file or directory Mar 19 18:16:37 2010 2621 3 7.04 TS: execvp(./RunCASTEP.sh) failed. No such file or directory Mar 19 18:16:37 2010 2620 3 7.04 TS: execvp(./RunCASTEP.sh) failed. No such file or directory Mar 19 18:16:37 2010 2625 3 7.04 TS: execvp(./RunCASTEP.sh) failed. No such file or directory Mar 19 18:16:37 2010 2624 3 7.04 TS: execvp(./RunCASTEP.sh) failed. No such file or directory Mar 19 18:16:37 2010 2623 3 7.04 TS: execvp(./RunCASTEP.sh) failed. No such file or directory Mar 19 18:16:37 2010 2626 3 7.04 TS: execvp(./RunCASTEP.sh) failed. No such file or directory Job /gpfssan1/apps/lsf/7.0/linux2.6-glibc2.3-x86_64/bin/intelmpi_wrapper ./RunCASTEP.sh TID HOST_NAME COMMAND_LINE STATUS TERMINATION_TIME ===== ========== ================ ======================= =================== 00000 c21n05 ./RunCASTEP.sh Exit (127) 03/19/2010 18:16:40 00001 c21n05 ./RunCASTEP.sh Exit (127) 03/19/2010 18:16:40 00002 c21n05 ./RunCASTEP.sh Exit (127) 03/19/2010 18:16:40 00003 c21n05 ./RunCASTEP.sh Exit (127) 03/19/2010 18:16:40 00004 c21n05 ./RunCASTEP.sh Exit (127) 03/19/2010 18:16:40 00005 c21n05 ./RunCASTEP.sh Exit (127) 03/19/2010 18:16:40 00006 c21n05 ./RunCASTEP.sh Exit (127) 03/19/2010 18:16:40 00007 c21n05 ./RunCASTEP.sh Exit (127) 03/19/2010 18:16:37 00008 c21n10 ./RunCASTEP.sh Exit (127) 03/19/2010 18:16:38 00009 c21n10 ./RunCASTEP.sh Exit (127) 03/19/2010 18:16:38 00010 c21n10 ./RunCASTEP.sh Exit (127) 03/19/2010 18:16:38 00011 c21n10 ./RunCASTEP.sh Exit (127) 03/19/2010 18:16:38 00012 c21n10 ./RunCASTEP.sh Exit (127) 03/19/2010 18:16:38 00013 c21n10 ./RunCASTEP.sh Exit (127) 03/19/2010 18:16:38 ------------------------------------------------------------ Sender: LSF System Subject: Job 1971: Job Job was executed on host(s) <8*c13n05>, in queue <8*c21n11> <8*c21n06> <8*c21n10> <8*c21n05> was used as the home directory. was used as the working directory. Started at Fri Mar 19 18:16:33 2010 Results reported at Fri Mar 19 18:16:43 2010 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input mpirun.lsf ./RunCASTEP.sh ------------------------------------------------------------ Exited with exit code 127. Resource usage summary: CPU time : 1.29 sec. Max Memory : 7 MB Max Swap : 203 MB Max Processes : 4 Max Threads : 4 The output (if any) is above this job summary. 请问是哪里出了问题，还有运行runMSserver.sh也出错，说句法错误 runMSserver.sh: eval: line 3: syntax error near unexpected token `(' #!/bin/sh export ACCELRYS_LICENSE_USERNAME=${USER} eval `$MS_INSTALL_ROOT/share/bin/ms_setup.sh $MS_INSTALL_ROOT/ -s sh` if [ -f "$MS_INSTALL_ROOT/share/license/data/lic_setup.sh" ]; then eval `$MS_INSTALL_ROOT/share/license/data/lic_setup.sh $MS_INSTALL_ROOT/ -s sh` fi export DSD_ROOT=$MS_INSTALL_ROOT/etc/Gateway/root_default/dsd export PERL5LIB="$MS_INSTALL_ROOT/etc/Gateway/perl/lib/5.8.7:$MS_INSTALL_ROOT/etc/Gateway/perl/lib/site_perl/5.8.7:$DSD_ROOT/commands" server=$1 shift $MS_INSTALL_ROOT/etc/Gateway/perl/bin/perl $DSD_ROOT/servers/$server.pl -standalone $* 请问，问题出在哪里？ |
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3楼2010-03-22 16:14:50
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2楼2010-03-20 08:38:32
