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bio_yifan

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[½»Á÷] 2026 applications for research assistant positions

£¨1£©EDUCATION
Sep. 2023 - present            Fujian Agricultural and Forestry University             Biomedical Science  
Core Courses (with scores): Bioinformatics (89), Research Progress in Biotechnology and Pharmaceuticals (92), Comprehensive Experiment of Molecular Biology (91), Molecular Biology and Genetic Engineering (81), Microbiology (92), Synthetic Biology (90.5)

£¨2£©RESEARCH EXPERIENCE

Since the project1 and project 2 have not yet been completed and published, the responsible content and main responsibilities will be presented in the detailed conversation with the teacher

Project 1: Characterization and Phylogenetic Analysis of optrA-Positive Linezolid-Resistant MRSA Causing Bloodstream Infections in China

Project 2: Staphylococcus aureus Research Project at Hanzhong 3201 Hospital

Project 3: Eucalyptus Germplasm Innovation and Industrialization Development
Core Responsibilities:
   - Led the development of a molecular fingerprint database for 50 eucalyptus varieties using Python+Django, MySQL, and HTML/CSS/JavaScript, enabling data interaction and front-end visualization.
   - Integrated and reanalyzed multi-omics data (RNA-seq, resequencing, T2T genome), developing functional modules for sequence alignment, data query, and bioinformatics analysis to support germplasm research.

Project 4: Genome-Wide Characterization and Gene Expression Analysis of PHR Transcription Factors in Eucalyptus
Core Responsibilities:
  - Assisted in project application and integrated abiotic stress transcriptome data of multiple eucalyptus species.
  - Conducted upstream data analysis and followed up on subsequent multi-omics research work.

£¨3£©PUBLICATIONS
[1] In Preparation: Characteristics and Phylogenetic Analysis of optrA-Positive Linezolid-Resistant MRSA Causing Bloodstream Infections in China (Planned for CAS Tier 1 Journal; Co-First Author)
[2] Preprint: Unveiling the PHR-centered regulatory network orchestrating the phosphate starvation signaling in Chinese fir (Cunninghamia lanceolata) (IF=5.75, Plant Journal, JCR Q1, CAS Tier 1; Co-First Author)
[3] Published: Genome-Wide Identification and Gene Expression Analysis of the Malate Dehydrogenase (MDH) Gene Family in Eucalyptus grandis (IF=4.8, Frontiers in Plant Science, JCR Q1, CAS Tier 2; First Author)
[4] Published: Xu, H.; Xing, Y.; Li, G.; et al. Decoding PHR-Orchestrated Stress Adaptation: A Genome-Wide Integrative Analysis of Transcriptional Regulation Under Abiotic Stress in Eucalyptus grandis. Int. J. Mol. Sci. 2025, 26, 2958. https://doi.org/10.3390/ijms26072958 (IF=4.9, JCR Q1, CAS Tier 3; Second Author)

(4)TECHNICAL SKILLS
Experimental Skills
    - Proficient in gene cloning, DNA/RNA extraction, Arabidopsis protoplast transformation, quantitative real-time PCR (qPCR), plant tissue culture, PAT-seq library construction, Western blotting, and tobacco infiltration experiments.
Analytical Skills
     - Programming Languages: Skilled in R, Python, and Linux command line.
    - Omics Analysis: Proficient in RNA-seq, DAP-seq, epitranscriptomics (m6anet pipeline), and second-generation resequencing analysis; experienced in GWAS, single-cell transcriptome analysis, T2T genome assembly, bacterial genome annotation, and pan-genomics analysis.
   - Analysis Tools: Mastered Beast (temporal phylogenetic tree construction), scientific plotting software (Origin, GraphPad Prism, Cytoscape, Adobe Illustrator, TBtools), and downstream omics data analysis tools, SCI figure preparation software, and online analysis platforms.

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