| 查看: 1510 | 回复: 2 | ||
| 【悬赏金币】回答本帖问题，作者callen123将赠送您 20 个金币 | ||
callen123金虫 (小有名气)
|
[求助]
LAMMPS入门报错求指导！急！！
|
|
|
各位大佬： LAMMPS in文件设置如下图所示，报错ERROR: All pair coeffs are not set (../pair.cpp:254)。 想用两种reaxff力场描述混合体系。其中 reaxff_JPCL力场描述mass 1-6，即S O C F Li H。用ffield.reax.ZnOH力场描述mass 7-9 Zn H O。请大佬指正如何设置好in文件？感谢感谢。 in 文件： ------------------------------------------ # LAMMPS input script for MD simulation # Initialization units real dimension 3 boundary p p p atom_style charge # Atom definition read_data LiFBS_3mol_MD.data # Mass and atom types mass 1 32.065 # S mass 2 15.9994 # O mass 3 12.0107 # C mass 4 18.9984032 # F mass 5 6.941 # Li mass 6 1.00794 # H mass 7 65.409 # Zn mass 8 1.00794 # H mass 9 15.9994 # O # Define other masses and atom types as needed set type 1 charge 0 set type 2 charge 0 set type 3 charge 0 set type 4 charge 0 set type 5 charge 0 set type 6 charge 0 set type 7 charge 0 set type 8 charge 0.4238 set type 9 charge -0.8476 # Force field settings pair_style reaxff NULL # Force field parameters for molecule pair_coeff * * reaxff_JPCL S O C F Li H NULL NULL NULL pair_coeff * * ffield.reax.ZnOH NULL NULL NULL NULL NULL NULL Zn H O fix 1 all qeq/reaxff 1 0.0 10.0 1.0e-6 reaxff #pair_coeff 7 7 lj/cut/coul/long 0.222 2.68 # Settings for simulation neighbor 2 bin neigh_modify every 1 delay 0 check yes # Minimization settings thermo_style custom step temp pe ke etotal press lx ly lz pxx pyy pzz thermo 100 dump 1 all custom 200 oxy.xyz id type x y z vx vy vz min_style cg minimize 1e-6 1e-8 1000 100000 # Equilibration timestep 1.0 unfix 1 fix 2 all npt temp 298.15 298.15 100 aniso 1.0 1.0 1000 run 5000 # 100 ps equilibration # Production MD #timestep 1.0 #unfix 2 #fix 3 all nvt temp 298.15 298.15 100 #run 5000 # 1 ns MD run ------------------------------------------ data文件在网盘： 链接: https://pan.baidu.com/s/1sVyUcJBCeSousqCaJtOBLQ 提取码: pdjh 报错信息： LAMMPS (20 Sep 2021) OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (../comm.cpp:98) using 1 OpenMP thread(s) per MPI task # LAMMPS input script for MD simulation # Initialization units real dimension 3 boundary p p p atom_style charge # Atom definition read_data LiFBS_3mol_MD.data Reading data file ... orthogonal box = (0.0000000 0.0000000 0.0000000) to (18.000000 18.000000 18.000000) 4 by 4 by 4 MPI processor grid reading atoms ... 653 atoms read_data CPU = 0.047 seconds # Mass and atom types mass 1 32.065 # S mass 2 15.9994 # O mass 3 12.0107 # C mass 4 18.9984032 # F mass 5 6.941 # Li mass 6 1.00794 # H mass 7 65.409 # Zn mass 8 1.00794 # H mass 9 15.9994 # O # Define other masses and atom types as needed set type 1 charge 0 Setting atom values ... 21 settings made for charge set type 2 charge 0 Setting atom values ... 63 settings made for charge set type 3 charge 0 Setting atom values ... 42 settings made for charge set type 4 charge 0 Setting atom values ... 63 settings made for charge set type 5 charge 0 Setting atom values ... 7 settings made for charge set type 6 charge 0 Setting atom values ... 42 settings made for charge set type 7 charge 0 Setting atom values ... 7 settings made for charge set type 8 charge 0.4238 Setting atom values ... 272 settings made for charge set type 9 charge -0.8476 Setting atom values ... 136 settings made for charge # Force field settings pair_style reaxff NULL # Force field parameters for molecule pair_coeff * * reaxff_JPCL S O C F Li H NULL NULL NULL WARNING: Van der Waals parameters for element MO indicate shielding without inner wall, but earlier elements indicate a different van der Waals method. This may cause division-by-zero errors. Keeping van der Waals setting for earlier atoms. (../reaxff_ffield.cpp:279) WARNING: Van der Waals parameters for element NI indicate shielding without inner wall, but earlier elements indicate a different van der Waals method. This may cause division-by-zero errors. Keeping van der Waals setting for earlier atoms. (../reaxff_ffield.cpp:279) WARNING: Van der Waals parameters for element B indicate shielding without inner wall, but earlier elements indicate a different van der Waals method. This may cause division-by-zero errors. Keeping van der Waals setting for earlier atoms. (../reaxff_ffield.cpp:279) WARNING: Van der Waals parameters for element F indicate shielding without inner wall, but earlier elements indicate a different van der Waals method. This may cause division-by-zero errors. Keeping van der Waals setting for earlier atoms. (../reaxff_ffield.cpp:279) WARNING: Van der Waals parameters for element P indicate shielding without inner wall, but earlier elements indicate a different van der Waals method. This may cause division-by-zero errors. Keeping van der Waals setting for earlier atoms. (../reaxff_ffield.cpp:279) WARNING: Changed valency_val to valency_boc for F (../reaxff_ffield.cpp:296) pair_coeff * * ffield.reax.ZnOH NULL NULL NULL NULL NULL NULL Zn H O Reading potential file ffield.reax.ZnOH with DATE: 2011-02-18 WARNING: Changed valency_val to valency_boc for X (../reaxff_ffield.cpp:296) fix 1 all qeq/reaxff 1 0.0 10.0 1.0e-6 reaxff #pair_coeff 7 7 lj/cut/coul/long 0.222 2.68 # Settings for simulation neighbor 2 bin neigh_modify every 1 delay 0 check yes # Minimization settings thermo_style custom step temp pe ke etotal press lx ly lz pxx pyy pzz thermo 100 dump 1 all custom 200 oxy.xyz id type x y z vx vy vz min_style cg minimize 1e-6 1e-8 1000 100000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - pair reaxff command: @Article{Aktulga12, author = {H. M. Aktulga, J. C. Fogarty, S. A. Pandit, A. Y. Grama}, title = {Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques}, journal = {Parallel Computing}, year = 2012, volume = 38, pages = {245--259} } - fix qeq/reaxff command: @Article{Aktulga12, author = {H. M. Aktulga, J. C. Fogarty, S. A. Pandit, A. Y. Grama}, title = {Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques}, journal = {Parallel Computing}, year = 2012, volume = 38, pages = {245--259} } CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE ERROR: All pair coeffs are not set (../pair.cpp:254) Last command: minimize 1e-6 1e-8 1000 100000 |
回复此楼» 猜你喜欢
0854复试调剂 276
已经有7人回复
-
【2026 硕士调剂】课题组 招收调剂生
已经有5人回复
-
298求调剂
已经有7人回复
-
085600 英一数二272求调剂
已经有19人回复
-
接收调剂
已经有17人回复
-
0857调剂
已经有6人回复
-
高分子化学与物理调剂
已经有16人回复
-
085602化学工程350，调剂，有没有211的
已经有8人回复
-
求调剂院校
已经有7人回复
-
276求调剂
已经有7人回复
 |
2楼2024-01-12 14:24:14
luyaobao
木虫 (著名写手)
- 应助: 1 (幼儿园)
- 金币: 2457.9
- 散金: 1091
- 红花: 23
- 沙发: 8
- 帖子: 1533
- 在线: 150.7小时
- 虫号: 7847640
- 注册: 2018-01-30
- 性别: GG
- 专业: 凝聚态物性I:结构、力学和
3楼2024-02-18 01:46:51
