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pumbaa

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[资源] 【讨论】关于hyperchem自动获取参数


使用hyperchem软件计算分子的描述符参数是比较简单的一件事,但是如果要计算很多的分子就必然需要能够自动计算并获取参数。我尝试使用Excel的vba功能通过DDE(动态数据交互)调用hyperchem,在该软件的安装目录的DirHyperchem/CDK/excel下有一个例子Hyper_VBA.xls,我在其基础上做了改进,代码如下:
Private Const n = 5, molpath$ = "C:\Hyper80\Samples\Aromatic\", hcpath$ = "C:\Hyper80\Program\"
Dim Channel, NewChan, wsn$, wbn$, datreq$(n)
Public Sub Calc()
On Error GoTo ErrorHandler
    datreq$(1) = "total-energy"
    datreq$(2) = "stretch-energy"
    datreq$(3) = "bend-energy"
    datreq$(4) = "torsion-energy"
    datreq$(5) = "nonbond-energy"
    Range("A2".Select   
    wsn$ = ActiveSheet.Name         ' Gets the names of the active worksheet and workbook
    wbn$ = ActiveWorkbook.Name
    MsgBox "Make sure this is the correct path of HyperChem & the needed files:" & Chr(13) & Chr(13) & hcpath$ + "chem.exe" & Chr(13) & "" & molpath$ & "filename.hin"
    Shell hcpath$ + "chem.exe", 6     '6 means non-selected iconized window.
    Channel = Application.DDEInitiate("HyperChem", "System"
###   NewChan = Application.DDEInitiate("HCQSAR", "System"
    Application.DDEExecute Channel, "[query-response-has-tag(no)]"
###    Application.DDEExecute NewChan, "[qsar-property logp]"
    CurrentCell = ActiveCell.FormulaR1C1
    Do While Not CurrentCell = ""
'Reads the molecule into the HyperChem and switches to Molecular Mechanic Calculation
        Application.DDEExecute Channel, "[file-format(hin)][open-file(" + molpath$ & Selection() & ".hin)]"
        Application.DDEExecute Channel, "[calculation-method molecular-mechanics]"
        Application.DDEExecute Channel, "[molecular-mechanics-method mm+]"
        Application.DDEExecute Channel, "[optim-algorithm polakribiere]"
        Application.DDEExecute Channel, "[optim-convergence 0.1]" '收敛标准
    Application.DDEExecute Channel, "[optim-max-cycles 100]" '最大优化回数
    Application.DDEExecute Channel, "[do-optimization]"
        Application.DDEExecute Channel, "[do-single-point]"        
###     Application.DDEExecute NewChan, "[do-calculation]"
###     Application.DDERequest NewChan, "[QSARResult]"
            For ci = 1 To n
                ActiveCell.Offset(rowOffset:=0, columnOffset:=ci).Value = Application.DDERequest(Channel, datreq$(ci))
            Next
        ActiveCell.Offset(rowOffset:=1, columnOffset:=0).Select
        CurrentCell = ActiveCell.FormulaR1C1
    Loop
    Application.DDEExecute Channel, "[menu-file-exit]"
    Application.DDETerminate Channel
Exit Sub

ErrorHandler:    ' Error-handling routine.
    Dim Msg As String
    Dim Style, Response   
    Msg = "Error # " & Str(Err.Number) & " was generated by " _
     & Err.Source & Chr(13) & Err.Description _
     & Chr(13) & Chr(13) & "Resume?"
    Style = vbYesNo + vbCritical + vbDefaultButton2   
    Response = MsgBox(Msg, Style, "Error", Err.HelpFile, Err.HelpContext)   
    If Response = vbYes Then: Resume   
End Sub
不过很可惜,我始终不能调用QSAR计算模块,虽然我参照其文档使用了Application.DDEInitiate("HCQSAR", "System"(相关语句在代码中前面标示了###),运行时总是体现“不问访问远程数据”的诡异错误。
其中excel中内容为:
Molecule        Total        Stretch        Bend        Torsion        vdW
benzene
在此我仅作为抛砖引玉了,盼望有高人解决!!


[ Last edited by zdhlover on 2009-11-15 at 13:36 ]
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samtyty

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这个要支持的,继续研究啊
2楼2009-06-07 16:16:32
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zeoliters

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3楼2009-06-07 20:44:25
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