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【分享】Building VASP with MKL
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Building VASP Build FFTW wrapper library for Intel® MKL Change directory to Assuming default installation-- $cd /opt/intel/mkl/10.0.2.018/interfaces/fftw3xfBuild the fftw 3.x Fortran wrapper library for Intel® 64 (previously known as em64t) platform using the Intel compilers. $make libem64t compiler=intelThis will create the fftw wrapper library "libfftw3xf_intel.a" in lib/em64t directory of your Intel® MKL installation. Build libdmy.a Change directory to vasp.x.x.lib. Run the following command from vasp.x.x.lib, using the Makefile for linux using the Intel compiler. #make -f makefile.linux_ifc_P4After a successful compilation, libdmy.a will be built in the same directory. Build VASP Change directory to vasp.x.x. Edit the makefile.linux_ifc_P4 to link with Intel® MKL libraries. Go to the section where BLAS, LAPACK and FFT libraries are specified and change as below, assuming the default installation /opt/intel/mkl/10.0.2.018 for MKL 10.0 update 2. BLAS=-L/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl_intel_lp64 -lmkl_blacs_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread LAPACK=-L/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl_intel_lp64 -lmkl_blacs_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread FFT3D= fftmpiw.o fftmpi_map.o fft3dlib.o /opt/intel/mkl/10.0.2.018/lib/em64t /libfftw3xf_intel.aModify Fortran compiler flags line to include fftw3.f from Intel® MKL include directory as below: FFLAGS= -I/opt/intel/mkl/10.0.2.018/include/fftw -FR -lower_caseThis will eliminate compilation errors pertaining to "cannot open include file `fftw3.f' when Intel® MKL FFT is used rather than VASP's own FFTs. To use Intel® MKL ScaLAPACK, modify additional options for CPP for parallel version adding -DscaLAPACK to the CPP line and specify Intel® MKL ScaLAPACK as below: SCA=/opt/intel/mkl/10.0.2.018/lib/em64t/libmkl_scalapack_lp64.a /opt/intel/mkl/10.0.2.018/lib/em64t/libmkl_blacs_intelmpi_lp64.a To use Intel® MPI specify Fortran compiler as FC=mpiifort. Run the following command to build vasp: $make -f makefile.linux_ifc_P4This will create the VASP executable in the current directory. Step 5 - Running VASP Run vasp by executing the following command with your workloads: $mpirun -n 4 ./vasp Appendix A - Performance Results Below are VASP benchmark results for HG. VASP version is 4.6.28 on an Intel® Xeon 5400 series Harpertown machine. Two Quad-core Xeon EM64T (harpertown) 2.83GHz CPUs 2 x 6M Cache 16G Bytes Memory 1333MHz FSB OS: RedHat Enterprise 4 U4 Libraries used: Intel® MKL 9.1.023 (including BLAS, LAPACK & FFT which are be used in VASP) Intel® MPI 3.1 Compiler to use: Intel 10.1 C/C++ complier for EM64T Intel 10.1 Fortran complier for EM64T Running time (seconds) Process Number Baseline program Tuned program with MKL 1 81.84 70.96 2 42.80 35.01 4 29.89 25.84 8 19.35 17.55 Appendix B - Known Issues and Limitations When the Intel® MKL FFT is used instead of VASP’s own implementation of FFT, it will give compilation errors similar to these: fortcom: Error: fftw3d.f90, line 501: Cannot open include file 'fftw3.f' include 'fftw3.f' ---------------^ fortcom: Error: fftw3d.f90, line 510: This name does not have a type, and must have an explicit type. [FFTW_FORWARD] FFTW_FORWARD, FFTW_ESTIMATE)To eliminate the above errors, do one of the below mentioned workarounds. Copy fftw3.f from $cp Modify makefile to include fftw3.f from Intel® MKL in the FFLAGS line: FFLAGS= -I/ 内容来源于http://software.intel.com/en-us/ ... g-intel-mkl-in-vasp [ Last edited by mingdong on 2009-9-14 at 16:57 ] |
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