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Alchemy4eM

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[ÇóÖú] ÇóÖúlammps¶¨Òågroup³öÏÖ´íÎóIllegal group command ÒÑÓÐ1È˲ÎÓë

¶¨ÒågroupµÄ³ÌÐòÂ룺
variable        temp1 equal 298.15               
variable        temp2 equal 358.15                       
variable        r index 3                       
units                real
atom_style        full
boundary        p p p
pair_style        lj/cut/coul/long 10 12
bond_style        harmonic
angle_style        harmonic
dihedral_style        harmonic
improper_style        cvff
read_data        water-.data
kspace_style        pppm 1.0e-6
neighbor        2.0 bin
neigh_modify        delay 5
velocity        all create ${temp1} 123456
timestep        1
write_dump        all atom dump.setup_Water_$rnm_${temp2}K.lammpstrj

group                O type 1
group                H type 2
group                water union O H

fix                1 water nvt temp ${temp1} ${temp1} 100 drag 0.2

thermo                1000
restart                5000000 restartWater_$rnm_${temp2}K.*
dump                1 all atom 10000 dump_Water_$rnm_equil_${temp2}K.lammpstrj                               

run                100000
unfix                1
undump                1

fix                1 water npt temp ${temp2} ${temp2} 100 x 1.0 1.0 0.2 y 1.0 1.0 0.2 z 1.0 1.0 0.2 drag 0.2

dump                1 all atom 100000 dump_Water_$rnm_${temp2}K.lammpstrj                                                #1000000


variable        step1 equal 100000                               
variable        step2 equal 1000000                               
variable        current equal "step"                               
variable        step3 equal 10000                               

compute                neighbor O coord/atom 5.1 1
compute                neighborH H coord/atom 5.1 2

variable        vapor atom " c_neighbor < 4 && c_neighborH == 0"
group                vapor dynamic all var vapor every ${step1}
variable        liquid atom " c_neighbor >= 4 && c_neighborH == 0"
group                liquid dynamic all var liquid every ${step1}



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Alchemy4eM: ½ð±Ò+2 2016-05-04 11:13:10
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2Â¥2016-05-02 20:12:19
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3Â¥2016-05-02 20:18:53
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Alchemy4eM

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ÒýÓûØÌû:
3Â¥: Originally posted by philipchan at 2016-05-02 20:18:53
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4Â¥2016-05-04 11:12:55
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