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StreptomeDB: a resource for natural compounds isolated from Streptomyces species
By Lucas, Xavier; Senger, Christian; Erxleben, Anika; Gruening, Bjoern A.; Doering, Kersten; Mosch, Johannes;
Flemming, Stephan; Guenther, Stefan
From Nucleic Acids Research (2013), 41(D1), D1130-D1136. Language: English, Database: CAPLUS,
DOI:10.1093/nar/gks1253
Bacteria from the genus Streptomyces are very important for the prodn. of natural bioactive compds. such as antibiotic,
antitumor or immunosuppressant drugs. Around two-thirds of all known natural antibiotics are produced by these
bacteria. An enormous quantity of crucial data related to this genus has been generated and published, but so far no
freely available and comprehensive database exists. Here, we present StreptomeDB (https://www.pharmaceuticalbioinformatics.
de/streptomedb/). To the best of our knowledge, this is the largest database of natural products isolated
from Streptomyces. It contains >2400 unique and diverse compds. from >1900 different Streptomyces strains and
substrains. In addn. to names and mol. structures of the compds., information about source organisms, refs., biol. role,
activities and synthesis routes (e.g. polyketide synthase derived and non-ribosomal peptides derived) is included. Data
can be accessed through queries on compd. names, chem. structures or organisms. Extn. from the literature was
performed through automatic text mining of thousands of articles from PubMed, followed by manual curation. All
annotated compd. structures can be downloaded from the website and applied for in silico screenings for identifying new
active mols. with undiscovered properties.

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