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更新到Chapter 29的Current Protocols in Molecular Biology(分子克隆 冷泉港出品)
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目录: Chapter 1 Escherichia coli, Plasmids, and BacteriophagesIntroduction Section I Escherichia coliUnit 1.1 Media Preparation and Bacteriological Tools Unit 1.2 Growth in Liquid Media Unit 1.3 Growth on Solid Media Unit 1.4 Selected Topics from Classical Bacterial Genetics Section II Vectors Derived from PlasmidsUnit 1.5 Introduction to Plasmid Biology Unit 1.6 Minipreps of Plasmid DNA Unit 1.7 Large-Scale Preparation of Plasmid DNA Unit 1.8 Introduction of Plasmid DNA into Cells Section III Vectors Derived from Lambda and Related BacteriophagesUnit 1.9 Introduction to Lambda Phages Unit 1.10 Lambda as a Cloning Vector Unit 1.11 Plating Lambda Phage to Generate Plaques Unit 1.12 Growing Lambda-Derived Vectors Unit 1.13 Preparing Lambda DNA from Phage Lysates Section IV Vectors Derived from Filamentous PhagesUnit 1.14 Introduction to Vectors Derived from Filamentous Phages Unit 1.15 Preparing and Using M13-Derived Vectors Section V Specialized TechniquesUnit 1.16 Recombineering: Genetic Engineering in Bacteria Using Homologous Recombination Unit 1.17 E. coli Genome Manipulation by P1 Transduction Chapter 2 Preparation and Analysis of DNAIntroduction Section I Manipulation of DNAUnit 2.1A Purification and Concentration of DNA from Aqueous Solutions Unit 2.1B Purification of DNA by Anion-Exchange Chromatography Unit 2.2 Preparation of Genomic DNA from Mammalian Tissue Unit 2.3 Preparation of Genomic DNA from Plant Tissue Unit 2.4 Preparation of Genomic DNA from Bacteria Section II Resolution and Recovery of Large DNA FragmentsUnit 2.5A Agarose Gel Electrophoresis Unit 2.5B Pulsed-Field Gel Electrophoresis Unit 2.6 Isolation and Purification of Large DNA Restriction Fragments from Agarose Gels Section III Resolution and Recovery of Small DNA FragmentsUnit 2.7 Separation of Small DNA Fragments by Conventional Gel Electrophoresis Unit 2.8 Capillary Electrophoresis of DNA Section IV Analysis of DNA Sequences by Blotting and HybridizationUnit 2.9A Southern Blotting Unit 2.9B Dot and Slot Blotting of DNA AUnit 2.10 Hybridization Analysis of DNA Blots Section V Synthesis and Purification of OligonucleotidesUnit 2.11 Synthesis and Purification of Oligonucleotides Unit 2.12 Purification of Oligonucleotides Using Denaturing Polyacrylamide Gel Electrophoresis Chapter 3 Enzymatic Manipulation of DNA and RNAIntroduction Section I Restriction EndonucleasesUnit 3.1 Digestion of DNA with Restriction Endonucleases Section II Restriction MappingUnit 3.2 Mapping by Multiple Endonuclease Digestions Unit 3.3 Mapping by Partial Endonuclease Digestions Section III Enzymes for Modifying and Radioactively Labeling Nucleic AcidsUnit 3.4 Reagents and Radioisotopes Used to Manipulate Nucleic Acids Unit 3.5 DNA-Dependent DNA Polymerases Unit 3.6 Template-Independent DNA Polymerases Unit 3.7 RNA-Dependent DNA Polymerases AUnit 3.8 DNA-Dependent RNA Polymerases Unit 3.9 DNA-Independent RNA Polymerases Unit 3.10 Phosphatases and Kinases Unit 3.11 Exonucleases Unit 3.12 Endonucleases Unit 3.13 Ribonucleases Unit 3.14 DNA Ligases Unit 3.15 RNA Ligases Section IV Construction of Hybrid DNA MoleculesUnit 3.16 Subcloning of DNA Fragments Unit 3.17 Constructing Recombinant DNA Molecules by PCR Section V Specialized ApplicationsUnit 3.18 Labeling and Colorimetric Detection of Nonisotopic Probes Unit 3.19 Chemiluminescent Detection of Nonisotopic Probes Unit 3.20 Recombinational Cloning Chapter 4 Preparation and Analysis of RNAIntroduction Section I Preparation of RNA from Eukaryotic and Prokaryotic CellsUnit 4.1 Preparation of Cytoplasmic RNA from Tissue Culture Cells Unit 4.2 Guanidine Methods for Total RNA Preparation AUnit 4.3 Phenol/SDS Method for Plant RNA Preparation Unit 4.4 Preparation of Bacterial RNA Unit 4.5 Preparation of Poly(A)+ RNA Section II Analysis of RNA Structure and SynthesisUnit 4.6 S1 Analysis of Messenger RNA Using Single-Stranded DNA Probes Unit 4.7 Ribonuclease Protection Assay Unit 4.8 Primer Extension Unit 4.9 Analysis of RNA by Northern and Slot Blot Hybridization Unit 4.10 Identification of Newly Transcribed RNA Chapter 5 Construction of Recombinant DNA LibrariesIntroduction Section I Overview of Recombinant DNA LibrariesUnit 5.1 Genomic DNA Libraries Unit 5.2 cDNA Libraries Section II Preparation of Insert DNA from Genomic DNAUnit 5.3 Size Fractionation Using Sucrose Gradients Unit 5.4 Size Fractionation Using Agarose Gels Section III Preparation of Insert DNA from Messenger RNAUnit 5.5 Conversion of mRNA into Double-Stranded cDNA Unit 5.6 Ligation of Linkers or Adapters to Double-Stranded cDNA Section IV Production of Genomic DNA and cDNA LibrariesUnit 5.7 Production of a Genomic DNA Library Unit 5.8A Production of a Complete cDNA Library Unit 5.9 Construction of Bacterial Artificial Chromosome (BAC/PAC) Libraries Section V Amplification of Transformed or Packaged LibrariesUnit 5.10 Amplification of a Bacteriophage Library Unit 5.11 Amplification of Cosmid and Plasmid Libraries Chapter 6 Screening of Recombinant DNA LibrariesIntroduction Section I Plating Libraries and Transfer to Filter MembranesUnit 6.1 Plating and Transferring Bacteriophage Libraries Unit 6.2 Plating and Transferring Cosmid and Plasmid Libraries Section II Hybridization with Radioactive ProbesUnit 6.3 Using DNA Fragments as Probes Unit 6.4 Using Synthetic Oligonucleotides as Probes Section III Purification of Bacteriophage, Cosmid, and Plasmid ClonesUnit 6.5 Purification of Bacteriophage Clones Unit 6.6 Purification of Cosmid and Plasmid Clones Section IV Screening with AntibodiesUnit 6.7 Immunoscreening of Fusion Proteins Produced in Lambda Plaques Unit 6.8 Immunoscreening after Hybrid Selection and Translation Section V Yeast Artificial Chromosome LibrariesUnit 6.9 Overview of Strategies for Screening YAC Libraries and Analyzing YAC Clones Unit 6.10 Analysis of Isolated YAC Clones Section VI Specialized Strategies for Screening LibrariesUnit 6.11 Use of Monoclonal Antibodies for Expression Cloning Unit 6.12 Recombination-Based Assay (RBA) for Screening Bacteriophage Lambda Libraries Chapter 7 DNA SequencingIntroduction Unit 7.1 Overview of DNA Sequencing Strategies Unit 7.2 Constructing Nested Deletions for Use in DNA Sequencing Unit 7.3 Preparation of Templates for DNA Sequencing Unit 7.4A DNA Sequencing by the Dideoxy Method Unit 7.4B Dideoxy DNA Sequencing with Chemiluminescent Detection Unit 7.5 DNA Sequencing by the Chemical Method Unit 7.6 Denaturing Gel Electrophoresis for Sequencing Unit 7.7 Computer Manipulation of DNA and Protein Sequences Unit 7.8 Polony DNA Sequencing Chapter 8 Mutagenesis of Cloned DNAIntroduction Unit 8.1 Oligonucleotide-Directed Mutagenesis without Phenotypic Selection Unit 8.2A Mutagenesis with Degenerate Oligonucleotides: Creating Numerous Mutations in a Small DNA Sequence Unit 8.2B Gene Synthesis: Assembly of Target Sequences Using Mutually Priming Long Oligonucleotides Unit 8.3 Random Mutagenesis by PCR Unit 8.4 Linker-Scanning Mutagenesis of DNA Unit 8.5 Directed Mutagenesis Using the Polymerase Chain Reaction Chapter 9 Introduction of DNA into Mammalian CellsIntroduction Section I Transfection of DNA into Eukaryotic CellsUnit 9.1 Calcium Phosphate Transfection Unit 9.2 Transfection Using DEAE-Dextran Unit 9.3 Transfection by Electroporation Unit 9.4 Transfection of Cultured Eukaryotic Cells Using Cationic Lipid Reagents Unit 9.5 Selection of Transfected Mammalian Cells Section II Uses of Fusion Genes in Mammalian TransfectionUnit 9.6 Overview of Genetic Reporter Systems Unit 9.7A Isotopic Assays for Reporter Gene Activity Unit 9.7B Nonisotopic Assays for Reporter Gene Activity Unit 9.7C Use of the A. Victoria Green Fluorescent Protein to Study Protein Dynamics in Vivo Unit 9.8 Direct Analysis of RNA after Transfection Section III Transduction of Genes Using Retrovirus VectorsUnit 9.9 Overview of the Retrovirus Transduction System Unit 9.10 Preparation of a Specific Retrovirus Producer Cell Line Unit 9.11 Transient Transfection Methods for Preparation of High-Titer Retroviral Supernatants Unit 9.12 Large-Scale Preparation and Concentration of Retrovirus Stocks Unit 9.13 Detection of Helper Virus in Retrovirus Stocks Unit 9.14 Retrovirus Infection of Cells In Vitro and In Vivo Section IV Inactivation of Genes in Mammalian CellsUnit 9.15 Human Somatic Cell Gene Targeting Chapter 10 Analysis of ProteinsIntroduction Section I Quantitation of ProteinsUnit 10.1A Spectrophotometric and Colorimetric Determination of Protein Concentration Unit 10.1B Quantitative Amino Acid Analysis Section II Electrophoretic Separation of ProteinsUnit 10.2A One-Dimensional SDS Gel Electrophoresis of Proteins Unit 10.2B One-Dimensional Electrophoresis Using Nondenaturing Conditions Unit 10.3 Two-Dimensional Gel Electrophoresis Using the ISO-DALT System Unit 10.4 Two-Dimensional Gel Electrophoresis Unit 10.5 Overview of Digital Electrophoresis Analysis Section III Detection of ProteinsUnit 10.6 Staining Proteins in Gels Unit 10.7 Detection of Proteins on Blot Transfer Membranes Unit 10.8 Immunoblotting and Immunodetection Section IV Purification of Proteins by Conventional ChromatographyUnit 10.9 Gel-Filtration Chromatography Unit 10.10 Ion-Exchange Chromatography Unit 10.11A Immunoaffinity Chromatography Unit 10.11B Metal-Chelate Affinity Chromatography Section V Purification of Proteins by High‑Performance Liquid ChromatographyUnit 10.12 HPLC of Peptides and Proteins: Preparation and System Set-Up Unit 10.13 HPLC of Peptides and Proteins: Standard Operating Conditions Unit 10.14 Reversed-Phase Isolation of Peptides Section VI Specialized ApplicationsUnit 10.15 Purification of Recombinant Proteins and Study of Protein Interaction by Epitope Tagging Unit 10.16 Immunoprecipitation Unit 10.17 Synthesizing Proteins In Vitro by Transcription and Translation of Cloned Genes Unit 10.18 Metabolic Labeling with Amino Acids Unit 10.19 Isolation of Proteins for Microsequence Analysis Unit 10.20 Capillary Electrophoresis of Proteins and Peptides Unit 10.21 Overview of Peptide and Protein Analysis by Mass Spectrometry Unit 10.22 Protein Identification and Characterization by Mass Spectrometry Unit 10.23 Difference Gel Electrophoresis (DIGE) Using CyDye DIGE Fluor Minimal Dyes Unit 10.24 Solution Radioimmunoassay of Proteins and Peptides Chapter 11 ImmunologyIntroduction Section I ImmunoassaysUnit 11.1 Conjugation of Enzymes to Antibodies Unit 11.2 Enzyme-Linked Immunosorbent Assays (ELISA) Unit 11.3 Isotype Determination of Antibodies Section II Preparation of Monoclonal AntibodiesUnit 11.4 Immunization of Mice Unit 11.5 Preparation of Myeloma Cells Unit 11.6 Preparation of Mouse Feeder Cells for Fusion and Cloning Unit 11.7 Fusion of Myeloma Cells with Immune Spleen Cells Unit 11.8 Cloning of Hybridoma Cell Lines by Limiting Dilution Unit 11.9 Freezing and Recovery of Hybridoma Cell Lines Unit 11.10 Production of Monoclonal Antibody Supernatant and Ascites Fluid Unit 11.11 Purification of Monoclonal Antibodies Section III Preparation of Polyclonal AntiseraUnit 11.12 Production of Polyclonal Antisera Unit 11.13 In Vitro Antibody Production Unit 11.14 Purification of Immunoglobulin G Fraction from Antiserum, Ascites Fluid, or Hybridoma Supernatant Section IV Preparation of Antipeptide AntibodiesUnit 11.15 Introduction to Peptide Synthesis Unit 11.16 Synthetic Peptides for Production of Antibodies that Recognize Intact Proteins Section V Determination of Specific Antibody Titer and IsotypeUnit 11.17 Determination of the Specific Antibody Titer Section VI Preparation and Use of Specialized AntibodiesUnit 11.18 Identification of Polyol-Responsive Monoclonal Antibodies for Use in Immunoaffinity Chromatography Chapter 12 DNA‑Protein InteractionsIntroduction Unit 12.1 Preparation of Nuclear and Cytoplasmic Extracts from Mammalian Cells Unit 12.2 Mobility Shift DNA-Binding Assay Using Gel Electrophoresis Unit 12.3 Methylation and Uracil Interference Assays for Analysis of Protein-DNA Interactions Unit 12.4 DNase I Footprint Analysis of Protein-DNA Binding Unit 12.5 UV Crosslinking of Proteins to Nucleic Acids Unit 12.6 Purification of DNA-Binding Proteins Using Biotin/Streptavidin Affinity Systems Unit 12.7 Detection, Purification, and Characterization of cDNA Clones Encoding DNA-Binding Proteins Unit 12.8 Rapid Separation of Protein-Bound DNA from Free DNA Using Nitrocellulose Filters Unit 12.9 Analysis of DNA-Protein Interactions Using Proteins Synthesized In Vitro from Cloned Genes Unit 12.10 Purification of Sequence-Specific DNA-Binding Proteins by Affinity Chromatography Unit 12.11 Determination of Protein-DNA Sequence Specificity by PCR-Assisted Binding-Site Selection Unit 12.12 Yeast One-Hybrid Screening for DNA-Protein Interactions Chapter 13 YeastIntroduction Section I Basic Techniques of Yeast GeneticsUnit 13.1 Preparation of Yeast Media Unit 13.2 Growth and Manipulation of Yeast Unit 13.3 Genome-Wide Transposon Mutagenesis in Yeast Unit 13.3B EMS and UV Mutagenesis in Yeast Section II Yeast VectorsUnit 13.4 Yeast Cloning Vectors and Genes Unit 13.6 Yeast Vectors and Assays for Expression of Cloned Genes Section III Manipulation of Yeast GenesUnit 13.7 Introduction of DNA into Yeast Cells Unit 13.8 Cloning Yeast Genes by Complementation Unit 13.9 Manipulation of Plasmids from Yeast Cells Unit 13.10 Manipulation of Cloned Yeast DNA Section IV Preparation of Yeast DNA, RNA, and ProteinsUnit 13.11 Preparation of Yeast DNA Unit 13.12 Preparation of Yeast RNA Unit 13.13 Preparation of Protein Extracts from Yeast Section V Schizosaccharomyces pombeUnit 13.14 Overview of Schizosaccharomyces pombe Unit 13.15 S. pombe Strain Maintenance and Media Unit 13.16 Growth and Manipulation of S. pombe Unit 13.17 Introduction of DNA into S. pombe Cells Chapter 14 In Situ Hybridization and ImmunohistochemistryIntroduction Unit 14.1 Fixation, Embedding, and Sectioning of Tissues, Embryos, and Single Cells Unit 14.2 Cryosectioning Unit 14.3 In Situ Hybridization to Cellular RNA Unit 14.4 Detection of Hybridized Probe Unit 14.5 Counterstaining and Mounting of Autoradiographed In Situ Hybridization Slides Unit 14.6 Immunohistochemistry Unit 14.7 In Situ Hybridization and Detection Using Nonisotopic Probes Unit 14.8 In Situ Polymerase Chain Reaction and Hybridization to Detect Low-Abundance Nucleic Acid Targets Unit 14.9 Whole-Mount In Situ Hybridization and Detection of RNAs in Vertebrate Embryos and Isolated Organs Unit 14.10 Principles and Application of Fluorescence Microscopy Unit 14.11 Basic Confocal Microscopy Unit 14.12 Measurement of In Situ Hybridization Unit 14.13 Morphological, Biochemical, and Flow Cytometric Assays of Apoptosis Unit 14.14 Whole-Mount Histochemical Detection of -Galactosidase Activity Unit 14.15 Overview of Image Analysis, Image Importing, and Image Processing using Freeware Unit 14.16 Three-Dimensional Reconstruction of Tissues Unit 14.17 Using CellProfiler for Automatic Identification and Measurement of Biological Objects in Images Chapter 15 The Polymerase Chain ReactionIntroduction Unit 15.1 Enzymatic Amplification of DNA by PCR: Standard Procedures and Optimization Unit 15.2 Direct DNA Sequencing of PCR Products Unit 15.3 Ligation-Mediated PCR for Genomic Sequencing and Footprinting Unit 15.4 Molecular Cloning of PCR Products Unit 15.5 Enzymatic Amplification of RNA by PCR (RT-PCR) Unit 15.6 cDNA Amplification Using One-Sided (Anchored) PCR Unit 15.7 Quantitation of Rare DNAs by PCR Unit 15.8 High-Throughput Real-Time Quantitative Reverse Transcription PCR Chapter 16 Protein ExpressionIntroduction Section I Expression of Proteins in Escherichia coliUnit 16.1 Overview of Protein Expression in E. coli Unit 16.2 Expression Using the T7 RNA Polymerase/Promoter System Unit 16.3 Expression Using Vectors with Phage Regulatory Sequences Unit 16.4A Introduction to Expression by Fusion Protein Vectors Unit 16.4B Enzymatic and Chemical Cleavage of Fusion Proteins Unit 16.5 Expression and Purification of lacZ and trpE Fusion Proteins Unit 16.6 Expression and Purification of Maltose-Binding Protein Fusions Unit 16.7 Expression and Purification of Glutathione-S-Transferase Fusion Proteins Unit 16.8 Expression and Purification of Thioredoxin Fusion Proteins Section II Expression of Proteins in Insect Cells Using Baculovirus VectorsUnit 16.9 Overview of the Baculovirus Expression System Unit 16.10 Maintenance of Insect Cell Cultures and Generation of Recombinant Baculoviruses Unit 16.11 Expression and Purification of Recombinant Proteins Using the Baculovirus System Section III Expression of Proteins in Mammalian CellsUnit 16.12 Transient Expression of Proteins Using COS Cells Unit 16.13 Expression and Purification of Epitope-Tagged Multisubunit Protein Complexes from Mammalian Cells Unit 16.14 Inducible Gene Expression Using an Autoregulatory, Tetracycline-Controlled System Unit 16.15 Overview of the Vaccinia Virus Expression System Unit 16.16 Preparation of Cell Cultures and Vaccinia Virus Stocks Unit 16.17 Generation of Recombinant Vaccinia Viruses Unit 16.18 Characterization of Recombinant Vaccinia Viruses and Their Products Unit 16.19 Gene Expression Using the Vaccinia Virus/T7 RNA Polymerase Hybrid System Unit 16.20 Expression of Proteins Using Semliki Forest Virus Vectors Unit 16.21 Overview of the HIV-1 Lentiviral Vector System Unit 16.22 Generation of HIV-1-Based Lentiviral Vector Particles Unit 16.23 Amplification Using CHO Cell Expression Vectors Unit 16.24 Helper-Dependent Adenoviral Vectors Unit 16.25 Production of Recombinant Adeno-Associated Viral Vectors for In Vitro and In Vivo Use Chapter 17 Preparation and Analysis of GlycoconjugatesIntroduction Section I Special Considerations for Glycoproteins and Their PurificationUnit 17.1 Special Considerations for Glycoproteins and Their Purification Unit 17.2 Special Considerations for Proteoglycans and Glycosaminoglycans and Their Purification Unit 17.3 Special Considerations for Glycolipids and Their Purification Section II Detection of Saccharides on GlycoconjugatesUnit 17.4 Metabolic Radiolabeling of Animal Cell Glycoconjugates Unit 17.5 Chemical Labeling of Carbohydrates by Oxidation and Sodium Borohydride Reduction Unit 17.6 Detection and Analysis of Proteins Modified by O-Linked N-Acetylglucosamine Unit 17.7 Lectin Analysis of Proteins Blotted onto Filters Unit 17.8 Detection of Glycophospholipid Anchors on Proteins Unit 17.9 Direct Chemical Analysis of Glycoconjugates for Carbohydrates Unit 17.10A Inhibition of N-Linked Glycosylation Unit 17.10B Inhibition of Glycolipid Biosynthesis Unit 17.11 Synthetic Glycosides as Primers of Oligosaccharide Biosynthesis and Inhibitors of Glycoprotein and Proteoglycan Assembly Section III Release of Saccharides from GlycoconjugatesUnit 17.12 Sialidases Unit 17.13A Endoglycosidase and Glycoamidase Release of N-Linked Oligosaccharides Unit 17.13B Analysis of Glycosaminoglycans with Polysaccharide Lyases Unit 17.14A Preparation of Glycopeptides Unit 17.14B Detection of Individual Glycosylation Sites on Glycoproteins Unit 17.15A -Elimination for Release of O-Linked Glycosaminoglycans from Proteoglycans Unit 17.15B -Elimination for Release of O-GalNAc-Linked Oligosaccharides from Glycoproteins and Glycopeptides Unit 17.16 Acid Hydrolysis for Release of Monosaccharides Unit 17.17A Enzymatic Release of Oligosaccharides from Glycolipids Unit 17.17B Endo--Galactosidases and Keratanase Section IV Analysis of Saccharides Released from GlycoconjugatesUnit 17.18 Analysis of Monosaccharides Unit 17.19A Total Compositional Analysis by High-Performance Liquid Chromatography or Gas-Liquid Chromatography Unit 17.19B Composition of Labeled Monosaccharides from Glycosaminoglycans Unit 17.20 Analysis of Oligosaccharide Negative Charge by Anion-Exchange Chromatography Unit 17.21A HPLC Methods for the Fractionation and Analysis of Negatively Charged Oligosaccharides and Gangliosides Unit 17.21B Fractionation and Analysis of Neutral Oligosaccharides by HPLC Unit 17.22A Nitrous Acid Degradation of Glycosaminoglycans Unit 17.22B Analysis of Disaccharides and Tetrasaccharides Released from Glycosaminoglycans Unit 17.23 Analysis of Sulfate Esters by Solvolysis or Hydrolysis Chapter 18 Analysis of Protein PhosphorylationIntroduction Unit 18.1 Overview of Protein Phosphorylation Unit 18.2 Labeling Cultured Cells with 32Pi and Preparing Cell Lysates for Immunoprecipitation Unit 18.3 Phosphoamino Acid Analysis Unit 18.4 Analysis of Phosphorylation of Unlabeled Proteins Unit 18.5 Detection of Phosphorylation by Enzymatic Techniques Unit 18.6 Production of Antibodies That Recognize Specific Tyrosine-Phosphorylated Peptides Unit 18.7 Assays of Protein Kinases Using Exogenous Substrates Unit 18.8 Permeabilization Strategies to Study Protein Phosphorylation Unit 18.9 Phosphopeptide Mapping and Identification of Phosphorylation Sites Unit 18.10 Use of Protein Phosphatase Inhibitors Unit 18.11 Design and Use of Analog-Sensitive Protein Kinases Unit 18.12 The Detection of MAPK Signaling Unit 18.13 Isolation of Phosphopeptides by Immobilized Metal Ion Affinity Chromatography Chapter 19 Informatics for Molecular BiologistsIntroduction Unit 19.1 Internet Basics for Biologists Unit 19.2 Sequence Databases: Integrated Information Retrieval and Data Submission Unit 19.3 Sequence Similarity Searching Using the BLAST Family of Programs Unit 19.4 Protein Databases on the Internet Unit 19.5 Basic Protein Sequence Analysis Unit 19.6 Analysis and Management of Microarray Gene Expression Data Chapter 20 Analysis of Protein InteractionsIntroduction Unit 20.1 Interaction Trap/Two-Hybrid System to Identify Interacting Proteins Unit 20.2 Affinity Purification of Proteins Binding to GST Fusion Proteins Unit 20.3 Phage-Based Expression Cloning to Identify Interacting Proteins Unit 20.4 Surface Plasmon Resonance for Measurements of Biological Interest Unit 20.5 Detection of Protein-Protein Interactions by Coprecipitation Unit 20.6 Identification of Protein Interactions by Far Western Analysis Unit 20.7 Two-Hybrid Dual Bait System Unit 20.8 Interaction Trap/Two-Hybrid System to Identify Loss-of-Interaction Mutant Proteins Chapter 21 Chromatin Assembly and AnalysisIntroduction Unit 21.1 Micrococcal Nuclease Analysis of Chromatin Structure Unit 21.2 Separation of Histone Variants and Post-Translationally Modified Isoforms by Triton/Acetic Acid/Urea Polyacrylamide Gel Electrophoresis Unit 21.3 Chromatin Immunoprecipitation for Determining the Association of Proteins with Specific Genomic Sequences In Vivo Unit 21.4 DNase I and Hydroxyl Radical Characterization of Chromatin Complexes Unit 21.5 Isolation of Histones and Nucleosome Cores from Mammalian Cells Unit 21.6 Assembly of Nucleosomal Templates by Salt Dialysis Unit 21.7 Chromatin Assembly Using Drosophila Systems Unit 21.8 Analysis of Protein Co-Occupancy by Quantitative Sequential Chromatin Immunoprecipitation Unit 21.9 Defining In Vivo Targets of Nuclear Proteins by Chromatin Immunoprecipitation and Microarray Analysis Unit 21.10 Identifying Chromosomal Targets of DNA-Binding Proteins by Sequence Tag Analysis of Genomic Enrichment (STAGE) Unit 21.11 Mapping Chromatin Interactions by Chromosome Conformation Capture Unit 21.12 Paired-End diTagging for Transcriptome and Genome Analysis Unit 21.13 ChIP-chip for Genome-Wide Analysis of Protein Binding in Mammalian Cells Unit 21.14 Chromosome Conformation Capture Carbon Copy Technology Chapter 22 Nucleic Acid ArraysIntroduction Unit 22.1 Overview of Nucleic Acid Arrays Unit 22.2 Preparation of mRNA for Expression Monitoring Unit 22.3 Profiling Human Gene Expression with cDNA Microarrays Unit 22.4 Overview of mRNA Expression Profiling Using Microarrays Unit 22.5 Pattern Discovery in Expression Profiling Data Chapter 23 Manipulating the Mouse GenomeIntroduction Unit 23.1 Overview of Gene Targeting by Homologous Recombination Unit 23.2 Mouse Embryo Fibroblast (MEF) Feeder Cell Preparation Unit 23.3 Mouse Embryonic Stem (ES) Cell Culture Unit 23.4 Mouse Embryonic Stem (ES) Cell Isolation Unit 23.5 Production of a Heterozygous Mutant Cell Line by Homologous Recombination (Single Knockout) Unit 23.6 Production of a Homozygous Mutant Embryonic Stem Cell Line (Double Knockout) Unit 23.7 Chimeric Mouse Production by Microinjection Unit 23.8 Mouse Colony Management Unit 23.9 Transgenic Mouse Production By Zygote Injection Unit 23.10 Transgenic Mouse Colony Management Unit 23.11 Modification and Production of BAC Transgenes Unit 23.12 Regulation of Transgene Expression Using Tetracycline Chapter 24 Generation and Use of Combinatorial LibrariesUnit 24.1 Overview of Receptors from Combinatorial Nucleic Acid and Protein Libraries Unit 24.2 Design, Synthesis, and Amplification of DNA Pools for Construction of Combinatorial Pools and Libraries Unit 24.3 In Vitro Selection of RNA Aptamers to a Protein Target by Filter Immobilization Unit 24.4 Peptide Aptamers: Dominant “Genetic” Agents for Forward and Reverse Analysis of Cellular Processes Unit 24.5 Protein Selection Using mRNA Display Chapter 25 Discovery and Analysis of Differentially Expressed Genes in Single Cells and Cell PopulationsIntroduction Section A Nucleic Acid Amplification from Individual CellsUnit 25A.1 Laser Capture Microdissection Unit 25A.2 Preparation of Single Cells from Solid Tissues for Analysis by PCR Section B Molecular Methods for Discovery of Differentially Expressed GenesUnit 25B.1 Production of a Subtracted cDNA Library Unit 25B.2 PCR-Based Subtractive cDNA Cloning Unit 25B.3 Differential Display of mRNA by PCR Unit 25B.4 Restriction-Mediated Differential Display (RMDD) Unit 25B.5 AFLP-Based Transcript Profiling Unit 25B.6 Serial Analysis of Gene Expression (SAGE): Experimental Method and Data Analysis Unit 25B.7 Representational Difference Analysis Unit 25B.8 Gene Expression Analysis of a Single or Few Cells Chapter 26 Gene SilencingIntroduction Unit 26.1 Overview of RNA Interference and Related Processes Unit 26.2 Gene Silencing by RNAi in Mammalian Cells Unit 26.3 RNA Interference in Caenorhabditis Elegans Unit 26.4 Cloning of Small RNA Molecules Unit 26.5 RNA Interference in Cultured Drosophila Cells Unit 26.6 RNAi in Transgenic Plants Unit 26.7 Analysis of Small Endogenous RNAs Unit 26.8 Using Morpholinos to Control Gene Expression Chapter 27 RNA‑Protein InteractionsIntroduction Unit 27.1 Agarose Gel Separation/Isolation of RNA-Protein Complexes Unit 27.2 Identification of RNA Binding Proteins by UV Cross-Linking Unit 27.3 Purification of Functional RNA-Protein Complexes using MS2-MBP Unit 27.4 RNA Immunoprecipitation for Determining RNA-Protein Associations In Vivo Chapter 28 Mammalian Cell CultureIntroduction Unit 28.1 Preparation, Culture, and Immortalization of Mouse Embryonic Fibroblasts Unit 28.2 Isolation and Immortalization of Lymphocytes Unit 28.3 Establishment and Culture of Human Skin Fibroblasts Chapter 29 Mouse PhenotypingIntroduction Section A General Considerations in Mouse PhenotypingUnit 29A.1 Uses of Forward and Reverse Genetics in Mice to Study Gene Function Unit 29A.2 Minimizing Variation Due to Genotype and Environment Unit 29A.3 Collection of Blood and Plasma from the Mouse Unit 29A.4 Tissue Collection for Systematic Phenotyping in the Mouse Section B Metabolic Exploration of the MouseUnit 29B.1 Evaluation of Energy Homeostasis Unit 29B.2 Lipid and Bile Acid Analysis Unit 29B.3 Evaluation of Glucose Homeostasis Unit 29B.4 Histopathology in Mouse Metabolic Investigations Appendix 1 Standard Measurements, Data, and Abbreviations1A Common Abbreviations 1B Useful Measurements and Data 1C Characteristics of Amino Acids 1D Characteristics of Nucleic Acids 1E Radioactivity 1F Safe Use of Radioisotopes 1G Centrifuges and Rotors 1H Safe Use of Hazardous Chemicals 1I Commonly Used Detergents 1J Common Conversion Factors 1K Compendium of Drugs Commonly Used in Molecular Biology Research Appendix 2 Commonly Used Reagents and Equipment2 Commonly Used Reagents and Equipment Appendix 3 Commonly Used Techniques in Biochemistry and Molecular Biology3A Detection and Quantitation of Radiolabeled Proteins and DNA in Gels and Blots 3B Silanizing Glassware 3C Dialysis and Ultrafiltration 3D Quantitation of DNA and RNA with Absorption and Fluorescence Spectroscopy 3E Introduction of Restriction Enzyme Recognition Sequences by Silent Mutation 3F Techniques for Mammalian Cell Tissue Culture 3G Importing Biological Materials 3H Kinetic Assay Methods 3I Statistics for the Molecular Biologist: Group Comparisons Appendix 4 Suppliers4 Selected Suppliers of Reagents and Equipment Appendix 5 Vectors5 Vectors |
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dd37043213615楼
2016-04-11 14:07
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pingshan17楼
2016-04-11 17:14
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pumcnsy19楼
2016-04-11 21:41
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2016-04-11 22:21
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zhchzhsh207621楼
2016-04-12 08:53
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想学好的学渣22楼
2016-04-12 10:11
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chinatiger23楼
2016-04-12 10:53
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biosensors24楼
2016-04-12 12:31
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song14826楼
2016-04-13 12:15
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weiyf1127楼
2016-04-13 14:23
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fulllove28楼
2016-04-13 15:56
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tangzonghao29楼
2016-04-13 23:06
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1949stone30楼
2016-04-14 06:38
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0302616631楼
2016-04-15 09:12
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谢沐沐沐32楼
2016-04-16 12:02
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小孩198733楼
2016-04-16 21:57
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2016-04-18 16:24
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2016-04-20 12:47
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2016-04-24 07:33
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alanguo38楼
2016-04-24 15:41
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dujing081941楼
2016-04-26 10:05
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2016-04-26 15:45
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lian305043楼
2016-04-29 16:20
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路静爱生活44楼
2016-05-03 23:14
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2016-05-04 10:08
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2016-05-05 14:52
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2016-05-06 22:35
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巴山虎50楼
2016-05-17 12:20
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