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mymarik铁杆木虫 (小有名气)
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[求助]
安装lammps的时候 出现fftw3d相关的一些提示 能帮我看看是什么问题吗 已有2人参与
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我在想是不是 要去除某个 package fft3d.o：在函数‘fft_3d’中： /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:151：对‘fftwf_execute_dft’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:214：对‘fftwf_execute_dft’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:277：对‘fftwf_execute_dft’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:151：对‘fftwf_execute_dft’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:214：对‘fftwf_execute_dft’未定义的引用 fft3d.o:/home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:277: 跟着更多未定义的参考到 fftwf_execute_dft fft3d.o：在函数‘fft_3d_create_plan’中： /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:852：对‘fftwf_plan_many_dft’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:857：对‘fftwf_plan_many_dft’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:862：对‘fftwf_plan_many_dft’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:867：对‘fftwf_plan_many_dft’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:872：对‘fftwf_plan_many_dft’未定义的引用 fft3d.o:/home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:877: 跟着更多未定义的参考到 fftwf_plan_many_dft fft3d.o：在函数‘fft_3d_destroy_plan’中： /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:987：对‘fftwf_destroy_plan’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:988：对‘fftwf_destroy_plan’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:989：对‘fftwf_destroy_plan’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:990：对‘fftwf_destroy_plan’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:991：对‘fftwf_destroy_plan’未定义的引用 fft3d.o:/home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:992: 跟着更多未定义的参考到 fftwf_destroy_plan fft3d.o：在函数‘fft_1d_only’中： /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:1218：对‘fftwf_execute_dft’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:1223：对‘fftwf_execute_dft’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:1228：对‘fftwf_execute_dft’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:1218：对‘fftwf_execute_dft’未定义的引用 /home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:1223：对‘fftwf_execute_dft’未定义的引用 fft3d.o:/home/tree/Software/lammps/src/Obj_mpi/../fft3d.cpp:1228: 跟着更多未定义的参考到 fftwf_execute_dft collect2: error: ld returned 1 exit status Makefile:91: recipe for target '../lmp_mpi' failed make[1]: *** [../lmp_mpi] Error 1 make[1]: Leaving directory '/home/tree/Software/lammps/src/Obj_mpi' Makefile:129: recipe for target 'mpi' failed make: *** [mpi] Error 2 |
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14楼2017-01-17 11:35:57
alundilong
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2楼2016-03-31 21:31:18
mymarik
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如果不安装多余的package（即用系统默认的package） 可以成功编译 而且能跑一部分例子 # mpi = default MPI compiler, default MPI SHELL = /bin/sh # --------------------------------------------------------------------- # compiler/linker settings # specify flags and libraries needed for your compiler CC = g++ #mpicxx CCFLAGS = -g -O3 -DLAMMPS_MEMALIGN=64 SHFLAGS = -fPIC DEPFLAGS = -M LINK = g++ #mpicxx LINKFLAGS = -g -O LIB = SIZE = size ARCHIVE = ar ARFLAGS = -rc SHLIBFLAGS = -shared # --------------------------------------------------------------------- # LAMMPS-specific settings, all OPTIONAL # specify settings for LAMMPS features you will use # if you change any -D setting, do full re-compile after "make clean" # LAMMPS ifdef settings # see possible settings in Section 2.2 (step 4) of manual LMP_INC = -DLAMMPS_GZIP # MPI library # see discussion in Section 2.2 (step 5) of manual # MPI wrapper compiler/linker can provide this info # can point to dummy MPI library in src/STUBS as in Makefile.serial # use -D MPICH and OMPI settings in INC to avoid C++ lib conflicts # INC = path for mpi.h, MPI compiler settings # PATH = path for MPI library # LIB = name of MPI library MPI_INC = -DMPICH_SKIP_MPICXX -I/home/tree/Software/mpich/src/include MPI_PATH = -L/usr/local/lib MPI_LIB = -lmpich -lmpl -lpthread # FFT library # see discussion in Section 2.2 (step 6) of manual # can be left blank to use provided KISS FFT library # INC = -DFFT setting, e.g. -DFFT_FFTW, FFT compiler settings # PATH = path for FFT library # LIB = name of FFT library FFT_INC = -DFFT_FFTW3 -DFFT_SINGLE -I/home/tree/Software/fftw/kernel FFT_PATH = -L/usr/local/lib FFT_LIB = -lfftw3 # JPEG and/or PNG library # see discussion in Section 2.2 (step 7) of manual # only needed if -DLAMMPS_JPEG or -DLAMMPS_PNG listed with LMP_INC # INC = path(s) for jpeglib.h and/or png.h # PATH = path(s) for JPEG library and/or PNG library # LIB = name(s) of JPEG library and/or PNG library JPG_INC = -I/home/tree/Software/jpeg JPG_PATH = -L/usr/local/lib JPG_LIB = /usr/local/lib/libjpeg.a # --------------------------------------------------------------------- # build rules and dependencies # do not edit this section include Makefile.package.settings include Makefile.package EXTRA_INC = $(LMP_INC) $(PKG_INC) $(MPI_INC) $(FFT_INC) $(JPG_INC) $(PKG_SYSINC) EXTRA_PATH = $(PKG_PATH) $(MPI_PATH) $(FFT_PATH) $(JPG_PATH) $(PKG_SYSPATH) EXTRA_LIB = $(PKG_LIB) $(MPI_LIB) $(FFT_LIB) $(JPG_LIB) $(PKG_SYSLIB) EXTRA_CPP_DEPENDS = $(PKG_CPP_DEPENDS) EXTRA_LINK_DEPENDS = $(PKG_LINK_DEPENDS) # Path to src files vpath %.cpp .. vpath %.h .. # Link target $(EXE): $(OBJ) $(EXTRA_LINK_DEPENDS) $(LINK) $(LINKFLAGS) $(EXTRA_PATH) $(OBJ) $(EXTRA_LIB) $(LIB) -o $(EXE) $(SIZE) $(EXE) # Library targets lib: $(OBJ) $(EXTRA_LINK_DEPENDS) $(ARCHIVE) $(ARFLAGS) $(EXE) $(OBJ) shlib: $(OBJ) $(EXTRA_LINK_DEPENDS) $(CC) $(CCFLAGS) $(SHFLAGS) $(SHLIBFLAGS) $(EXTRA_PATH) -o $(EXE) \ $(OBJ) $(EXTRA_LIB) $(LIB) # Compilation rules %.o:%.cpp $(EXTRA_CPP_DEPENDS) $(CC) $(CCFLAGS) $(SHFLAGS) $(EXTRA_INC) -c $< %.d:%.cpp $(EXTRA_CPP_DEPENDS) $(CC) $(CCFLAGS) $(EXTRA_INC) $(DEPFLAGS) $< > $@ %.o:%.cu $(EXTRA_CPP_DEPENDS) $(CC) $(CCFLAGS) $(SHFLAGS) $(EXTRA_INC) -c $< # Individual dependencies DEPENDS = $(OBJ:.o=.d) sinclude $(DEPENDS) |
3楼2016-03-31 21:41:35
alundilong
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【答案】应助回帖
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FFT_INC = -DFFT_FFTW3 -DFFT_SINGLE -I/home/tree/Software/fftw/kernel FFT_PATH = -L/usr/local/lib FFT_LIB = -lfftw3 看到这里，我有如下推测，不知准不准确：楼主的fftw是自己进行编译，并且设置configure的时候 使用了./configure --prefix=/home/tree/Software/fftw。如果我的想法是成立的话，我建议楼主将FFT_PATH改成FFT_PATH=-L/home/tree/Software/fftw/lib, 将FFT_INC改成 FFT_INC = -DFFT_FFTW3 -DFFT_SINGLE -I/home/tree/Software/fftw/include 其他不变。 如果以上推测成立，即楼主自行编译安装了mpich，并且使用了--prefix=/home/tree/Software/mpich/ 建议楼主做相应修改，即MPI_INC = -DMPICH_SKIP_MPICXX -I/home/tree/Software/mpich/include 和MPI_PATH = -L/home/tree/Software/mpich/lib MPI_INC = -DMPICH_SKIP_MPICXX -I/home/tree/Software/mpich/src/include MPI_PATH = -L/usr/local/lib MPI_LIB = -lmpich -lmpl -lpthread 对于JPG，建议也做如上相应的修改。 JPG_INC = -I/home/tree/Software/jpeg JPG_PATH = -L/usr/local/lib JPG_LIB = /usr/local/lib/libjpeg.a |
4楼2016-04-01 01:31:26
