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[求助]
求问各位大神,怎么将两条建好的蛋白链拼在一起形成异源二聚体啊??? 已有1人参与
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我用modeller建了两条蛋白链,但是现在遇到了问题,就是要怎么把两条链拼在一起形成异源二聚体呢?在modeller脚本有看到 from modeller import * from modeller.automodel import * # Load the automodel class log.verbose() class MyModel(automodel): def special_patches(self, aln): # Rename both chains and renumber the residues in each self.rename_segments(segment_ids=['X', 'Y'], renumber_residues=[1, 1]) # Another way to label individual chains: self.chains[0].name = 'X' self.chains[1].name = 'Y' def special_restraints(self, aln): rsr = self.restraints at = self.atoms # Restrain the specified CB-CB distance to 8 angstroms (st. dev.=0.1) # Use a harmonic potential and X-Y distance group. # Note that because special_patches is called before special_restraints, # we must use the relabeled chain IDs and residue numbers here. rsr.add(forms.gaussian(group=physical.xy_distance, feature=features.distance(at[CB:40:Y], at['CB:71:Y']), mean=8.0, stdev=0.1)) 这个脚本中指明是Y链的两个β碳原子,那两条链之间的距离还是没有说明,是吧?求各位大神指点迷津啊 |
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