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永峰1230

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[求助] 序列提交 reading frame shifts 已有1人参与

序列提交后收到邮件:
We have noticed that some or all of the sequences contain internal stop
codons and/or reading frame shifts (insertions/deletions based on BLAST
similarity search results and/or an alignment).

This generally indicates problems such as:

  - errors in the nucleotide sequence
  - sequences have not been trimmed of low quality
  - problems with feature annotation which may be due to:
        translation in the wrong reading frame or on the wrong strand
        translation does not have the correct exon spans
        translation includes noncoding sequence, such as introns or UTR's
          
If the sequences and/or annotation are incorrect, please resubmit
with the corrected files. If the information is correct, please explain
the presence of the internal stop codons and/or frame shifts.

If you are unable to determine the correct sequence and/or annotation
for your sequence(s), they can still be processed and the following
comment will be added to your records:

COMMENT  GenBank staff is unable to verify sequence and/or annotation
         provided by the submitter.
         
In addition, the record(s) will indicate that the data are unverified and
your sequence(s) will not be included in NCBI BLAST databases.

Please either:

        [1] resubmit with correct sequence(s) and/or annotation
        or
        [2] confirm that your sequence(s) should be processed as unverified.
试过好几种方法,,都是这种邮件,,,该怎么弄呢???
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永峰1230

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引用回帖:
4楼: Originally posted by wizardfan at 2014-12-31 10:43:16
unverified = 没进一步证实, it can be verified by you or someone else. But as it is a new sequence, you are the only person to verify it.
If I see an unverified sequence in NCBI, I won't use it as th ...

如果回复邮件说是 unverified,  能够提交上去吗?  还需要进一步做什么吗?
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5楼2014-12-31 11:02:46
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wizardfan

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永峰1230: 金币+6, ★★★很有帮助 2014-12-30 10:09:16
"试过好几种方法", what have you tried?

It says clear in the email:
1. check why there are stop codons in your sequence

2. or just to say it is unverified sequence

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2楼2014-12-20 10:20:26
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永峰1230

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引用回帖:
2楼: Originally posted by wizardfan at 2014-12-20 10:20:26
"试过好几种方法", what have you tried?

It says clear in the email:
1. check why there are stop codons in your sequence

2. or just to say it is unverified sequence

or just to say it is unverified sequence ,,是什么意思呢? 是指没有人表达的吗? 还是说  这只是我扩增测序出来的,,没有人进一步证实的?
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3楼2014-12-30 10:09:07
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wizardfan

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永峰1230: 金币+6, ★★★很有帮助 2014-12-31 11:02:54
unverified = 没进一步证实, it can be verified by you or someone else. But as it is a new sequence, you are the only person to verify it.
If I see an unverified sequence in NCBI, I won't use it as the quality of the sequence is unknown.
4楼2014-12-31 10:43:16
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