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Zhang H M, Chen H, Liu W, et al. AnimalTFDB: a comprehensive animal transcription factor database[J]. Nucleic acids research, 2012, 40(D1): D144-D149.
We compared our predicted human and mouse TFs with those published by DBD (12) and TFCat (8) databases. DBD is a comprehensive predicted TF database for bacteria, archaea and eukaryotes, while TFCat is a curated catalog for human and mouse TFs. For DBD database, through converting the protein ID into gene ID, we obtained 1383 and 1386 Ensembl gene IDs for human and mouse TF genes, respectively. By comparison, the AnimalTFDB includes 93.7% of human TFs and 93.6% of mouse TFs from DBD database. For the TFs in TFCat database, after ID conversion, we got 521 and 543 Ensembl gene IDs for human and mouse TFs, respectively. The compared result showed that 97.1% of human TFs and 96.3% of mouse TFs from TFCat database were available in our database. |
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