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[交流]
【求助】新手关于gaussian运行求助！（急！急！急！悬赏求解！）
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本人菜鸟，刚开始学习gaussian，经过一个星期摸索，终于安装成功软件linux RedHat版. 但是输入测试文档后，输出文件最后只到这一步（如下面所示）： Rotational constants (GHZ): 919.0227225 408.0852053 282.5991530 Standard basis: STO-3G (5D, 7F) There are 4 symmetry adapted basis functions of A1 symmetry. There are 0 symmetry adapted basis functions of A2 symmetry. There are 1 symmetry adapted basis functions of B1 symmetry. There are 2 symmetry adapted basis functions of B2 symmetry. Integral buffers will be 131072 words long. Raffenetti 1 integral format. Two-electron integral symmetry is turned on. 7 basis functions, 21 primitive gaussians, 7 cartesian basis functions 5 alpha electrons 5 beta electrons nuclear repulsion energy 9.1571759100 Hartrees. NAtoms= 3 NActive= 3 NUniq= 2 SFac= 1.69D+00 NAtFMM= 80 NAOKFM=F Big=F One-electron integrals computed using PRISM. NBasis= 7 RedAO= T NBF= 4 0 1 2 NBsUse= 7 1.00D-06 NBFU= 4 0 1 2 这个结果与给出的标准输出明显不同（似乎没有计算完毕）。 我又依次输入了top——u——usr命令检测系统进程，并没有发现有相关gaussian程序执行，换了不同输入文档（来自小木虫，正确性因该不会有问题），重复了很多次，结果依然，均没有在最后的log看到任务结束的显示。 我想知道到底是程序本身没有安装好？还是我的操作不当结束了程序？或者gaussian程序依然在执行，只是我没有看到？怎样才知道gaussian是否安装成功？如何知道执行程序是否依然进行?希望大家给予指点，不胜感激！  |
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jj2006(金币+10): 2011-01-15 22:35:26
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jj2006(金币+5): 2011-01-16 14:56:16
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Entering Gaussian System, Link 0=g09 Initial command: /home/software//g09/l1.exe /home/software/temp/Gau-17066.inp -scrdir=/home/software/temp/ Entering Link 1 = /home/software//g09/l1.exe PID= 17067. Copyright (c) 1988,1990,1992,1993,1995,1998,2003,2009, Gaussian, Inc. All Rights Reserved. This is part of the Gaussian(R) 09 program. It is based on the Gaussian(R) 03 system (copyright 2003, Gaussian, Inc.), the Gaussian(R) 98 system (copyright 1998, Gaussian, Inc.), the Gaussian(R) 94 system (copyright 1995, Gaussian, Inc.), the Gaussian 92(TM) system (copyright 1992, Gaussian, Inc.), the Gaussian 90(TM) system (copyright 1990, Gaussian, Inc.), the Gaussian 88(TM) system (copyright 1988, Gaussian, Inc.), the Gaussian 86(TM) system (copyright 1986, Carnegie Mellon University), and the Gaussian 82(TM) system (copyright 1983, Carnegie Mellon University). Gaussian is a federally registered trademark of Gaussian, Inc. This software contains proprietary and confidential information, including trade secrets, belonging to Gaussian, Inc. This software is provided under written license and may be used, copied, transmitted, or stored only in accord with that written license. The following legend is applicable only to US Government contracts under FAR: RESTRICTED RIGHTS LEGEND Use, reproduction and disclosure by the US Government is subject to restrictions as set forth in subparagraphs (a) and (c) of the Commercial Computer Software - Restricted Rights clause in FAR 52.227-19. Gaussian, Inc. 340 Quinnipiac St., Bldg. 40, Wallingford CT 06492 --------------------------------------------------------------- Warning -- This program may not be used in any manner that competes with the business of Gaussian, Inc. or will provide assistance to any competitor of Gaussian, Inc. The licensee of this program is prohibited from giving any competitor of Gaussian, Inc. access to this program. By using this program, the user acknowledges that Gaussian, Inc. is engaged in the business of creating and licensing software in the field of computational chemistry and represents and warrants to the licensee that it is not a competitor of Gaussian, Inc. and that it will not use this program in any manner prohibited above. --------------------------------------------------------------- Cite this work as: Gaussian 09, Revision A.01, M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, G. Scalmani, V. Barone, B. Mennucci, G. A. Petersson, H. Nakatsuji, M. Caricato, X. Li, H. P. Hratchian, A. F. Izmaylov, J. Bloino, G. Zheng, J. L. Sonnenberg, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, T. Vreven, J. A. Montgomery, Jr., J. E. Peralta, F. Ogliaro, M. Bearpark, J. J. Heyd, E. Brothers, K. N. Kudin, V. N. Staroverov, R. Kobayashi, J. Normand, K. Raghavachari, A. Rendell, J. C. Burant, S. S. Iyengar, J. Tomasi, M. Cossi, N. Rega, J. M. Millam, M. Klene, J. E. Knox, J. B. Cross, V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, R. L. Martin, K. Morokuma, V. G. Zakrzewski, G. A. Voth, P. Salvador, J. J. Dannenberg, S. Dapprich, A. D. Daniels, O. Farkas, J. B. Foresman, J. V. Ortiz, J. Cioslowski, and D. J. Fox, Gaussian, Inc., Wallingford CT, 2009. ****************************************** Gaussian 09: EM64L-G09RevA.01 8-May-2009 16-Dec-2009 ****************************************** ------------------------------------------------------ # SP, RHF/STO-3G punch=archive trakio scf=conventional ------------------------------------------------------ 1/38=1/1; 2/12=2,17=6,18=5,40=1/2; 3/6=3,11=1,16=1,25=14,30=1,116=1/1,2,3,11,14; 4//1; 5/5=1/2; 6/7=2,8=2,9=2,10=2,28=1/1; 99/5=1,9=1,10=8/99; ----------------------------------------- Gaussian Test Job 00 Water with archiving ----------------------------------------- Symbolic Z-matrix: Charge = 0 Multiplicity = 1 O H 1 0.96 H 1 0.96 2 109.47122 1 tetrahedral angles replaced. 1 tetrahedral angles replaced. Input orientation: --------------------------------------------------------------------- Center Atomic Atomic Coordinates (Angstroms) Number Number Type X Y Z --------------------------------------------------------------------- 1 8 0 0.000000 0.000000 0.000000 2 1 0 0.000000 0.000000 0.960000 3 1 0 0.905097 0.000000 -0.320000 --------------------------------------------------------------------- Distance matrix (angstroms): 1 2 3 1 O 0.000000 2 H 0.960000 0.000000 3 H 0.960000 1.567673 0.000000 Stoichiometry H2O Framework group C2V[C2(O),SGV(H2)] Deg. of freedom 2 Full point group C2V NOp 4 Largest Abelian subgroup C2V NOp 4 Largest concise Abelian subgroup C2 NOp 2 Standard orientation: --------------------------------------------------------------------- Center Atomic Atomic Coordinates (Angstroms) Number Number Type X Y Z --------------------------------------------------------------------- 1 8 0 0.000000 0.000000 0.110851 2 1 0 0.000000 0.783837 -0.443405 3 1 0 0.000000 -0.783837 -0.443405 --------------------------------------------------------------------- Rotational constants (GHZ): 919.0227225 408.0852053 282.5991530 Standard basis: STO-3G (5D, 7F) There are 4 symmetry adapted basis functions of A1 symmetry. There are 0 symmetry adapted basis functions of A2 symmetry. There are 1 symmetry adapted basis functions of B1 symmetry. There are 2 symmetry adapted basis functions of B2 symmetry. Integral buffers will be 131072 words long. Raffenetti 1 integral format. Two-electron integral symmetry is turned on. 7 basis functions, 21 primitive gaussians, 7 cartesian basis functions 5 alpha electrons 5 beta electrons nuclear repulsion energy 9.1571759100 Hartrees. NAtoms= 3 NActive= 3 NUniq= 2 SFac= 1.69D+00 NAtFMM= 80 NAOKFM=F Big=F One-electron integrals computed using PRISM. NBasis= 7 RedAO= T NBF= 4 0 1 2 NBsUse= 7 1.00D-06 NBFU= 4 0 1 2 以上是全部的输出，我对照了正确的输出，除了不完整外，真的没有看出来别的问题。 |
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22楼2011-01-17 10:43:37
jj2006(金币+10): 多谢指教 2011-01-17 19:35:55
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首先，建议任何新手包括高手在内，输入文件的命令行都要写成#p ******的形式，也就是#后面一定要紧跟一个字母p，这样输出文件内容会更丰富，便于跟踪系统运行到哪里，对出错信息的描述更加丰富； 其次，递交命令应该是g09 yourfile.gjf&，然后回车，也就是文件结尾跟上一个&符号，表示放到后台运行； 然后用top命令看301,502等等是否跑起来了； 如果递交任务后需要退出，一定要用exit命令来退出，不要直接关闭ssh的窗口，否则随着你的退出，任务可能就同时被终止了。如果这个账号有多人登录运行，也许别人的误操作也会kill掉你的进程。 由于没有#p的命令，从你的输出文件中看不到任何错误信息。。。 再试一次，把错误信息贴出来，大家看看。 |
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